Predicted Trait | |
Reported Trait | Immature reticulocyte fraction |
Mapped Trait(s) | Immature Reticulocyte Fraction Measurement (EFO_0009253) |
Additional Trait Information | biological measures |
Score Construction | |
PGS Name | portability-ldpred2_immature_reticulocyte_frac |
Development Method | |
Name | LDpred2 (bigsnpr) |
Parameters | LDpred2-auto using HapMap3 variants |
Variants | |
Original Genome Build | GRCh37 |
Number of Variants | 664,696 |
Effect Weight Type | beta |
PGS Source | |
PGS Catalog Publication (PGP) ID | PGP000263 |
Citation (link to publication) | Privé F et al. Am J Hum Genet (2022) |
Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) | Phenotype Definitions & Methods | Age of Study Participants | Participant Follow-up Time | Additional Ancestry Description | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
— | 391,124 individuals | European | UKB | — | — | — | UK (+ Ireland) | — |
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|
PPM012023 | PSS009417| European Ancestry| 19,121 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Immature reticulocyte fraction | — | — | Partial Correlation (partial-r): 0.3135 [0.3007, 0.3263] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012024 | PSS009191| European Ancestry| 3,924 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Immature reticulocyte fraction | — | — | Partial Correlation (partial-r): 0.3215 [0.2931, 0.3494] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012025 | PSS008745| European Ancestry| 6,298 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Immature reticulocyte fraction | — | — | Partial Correlation (partial-r): 0.3195 [0.2971, 0.3416] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012026 | PSS008519| Greater Middle Eastern Ancestry| 1,127 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Immature reticulocyte fraction | — | — | Partial Correlation (partial-r): 0.2889 [0.234, 0.342] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012027 | PSS008297| South Asian Ancestry| 5,937 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Immature reticulocyte fraction | — | — | Partial Correlation (partial-r): 0.2624 [0.2385, 0.286] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012028 | PSS008074| East Asian Ancestry| 1,722 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Immature reticulocyte fraction | — | — | Partial Correlation (partial-r): 0.2089 [0.163, 0.2539] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012029 | PSS007861| African Ancestry| 2,294 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Immature reticulocyte fraction | — | — | Partial Correlation (partial-r): 0.1842 [0.1442, 0.2236] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012030 | PSS008965| African Ancestry| 3,602 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Immature reticulocyte fraction | — | — | Partial Correlation (partial-r): 0.174 [0.1421, 0.2056] | sex, age, birth date, deprivation index, 16 PCs | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS008965 | — | — | 3,602 individuals | — | African unspecified | Nigeria (West Africa) | UKB | — |
PSS009191 | — | — | 3,924 individuals | — | European | Poland (NE Europe) | UKB | — |
PSS008519 | — | — | 1,127 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iran (Middle East) | UKB | — |
PSS008297 | — | — | 5,937 individuals | — | South Asian | India (South Asia) | UKB | — |
PSS009417 | — | — | 19,121 individuals | — | European | UK (+ Ireland) | UKB | — |
PSS008745 | — | — | 6,298 individuals | — | European | Italy (South Europe) | UKB | — |
PSS008074 | — | — | 1,722 individuals | — | East Asian | China (East Asia) | UKB | — |
PSS007861 | — | — | 2,294 individuals | — | African American or Afro-Caribbean | Carribean | UKB | — |