Predicted Trait | |
Reported Trait | Ease of skin tanning |
Mapped Trait(s) | suntan (EFO_0004279) |
Additional Trait Information | physical measures |
Score Construction | |
PGS Name | portability-ldpred2_less_tanned |
Development Method | |
Name | LDpred2 (bigsnpr) |
Parameters | LDpred2-auto using HapMap3 variants |
Variants | |
Original Genome Build | GRCh37 |
Number of Variants | 240,701 |
Effect Weight Type | beta |
PGS Source | |
PGS Catalog Publication (PGP) ID | PGP000263 |
Citation (link to publication) | Privé F et al. Am J Hum Genet (2022) |
Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) | Phenotype Definitions & Methods | Age of Study Participants | Participant Follow-up Time | Additional Ancestry Description | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
— | 391,124 individuals | European | UKB | — | — | — | UK (+ Ireland) | — |
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|
PPM012090 | PSS008526| Greater Middle Eastern Ancestry| 996 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Ease of skin tanning | — | — | Partial Correlation (partial-r): 0.0806 [0.0179, 0.1426] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012087 | PSS009424| European Ancestry| 19,578 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Ease of skin tanning | — | — | Partial Correlation (partial-r): 0.4051 [0.3933, 0.4168] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012088 | PSS009198| European Ancestry| 3,995 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Ease of skin tanning | — | — | Partial Correlation (partial-r): 0.3281 [0.3, 0.3555] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012089 | PSS008752| European Ancestry| 6,490 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Ease of skin tanning | — | — | Partial Correlation (partial-r): 0.3057 [0.2834, 0.3276] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012091 | PSS008304| South Asian Ancestry| 5,414 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Ease of skin tanning | — | — | Partial Correlation (partial-r): 0.0246 [-0.0021, 0.0512] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012092 | PSS008081| East Asian Ancestry| 1,651 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Ease of skin tanning | — | — | Partial Correlation (partial-r): -0.0075 [-0.056, 0.041] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012093 | PSS007868| African Ancestry| 2,004 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Ease of skin tanning | — | — | Partial Correlation (partial-r): -0.0465 [-0.0903, -0.0025] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012094 | PSS008972| African Ancestry| 2,347 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Ease of skin tanning | — | — | Partial Correlation (partial-r): -0.0194 [-0.06, 0.0212] | sex, age, birth date, deprivation index, 16 PCs | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS008972 | — | — | 2,347 individuals | — | African unspecified | Nigeria (West Africa) | UKB | — |
PSS008526 | — | — | 996 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iran (Middle East) | UKB | — |
PSS009198 | — | — | 3,995 individuals | — | European | Poland (NE Europe) | UKB | — |
PSS008752 | — | — | 6,490 individuals | — | European | Italy (South Europe) | UKB | — |
PSS008304 | — | — | 5,414 individuals | — | South Asian | India (South Asia) | UKB | — |
PSS009424 | — | — | 19,578 individuals | — | European | UK (+ Ireland) | UKB | — |
PSS008081 | — | — | 1,651 individuals | — | East Asian | China (East Asia) | UKB | — |
PSS007868 | — | — | 2,004 individuals | — | African American or Afro-Caribbean | Carribean | UKB | — |