Predicted Trait | |
Reported Trait | Morning/evening person (chronotype) |
Mapped Trait(s) | chronotype measurement (EFO_0008328) |
Additional Trait Information | lifestyle and environment |
Score Construction | |
PGS Name | portability-ldpred2_more_evening |
Development Method | |
Name | LDpred2 (bigsnpr) |
Parameters | LDpred2-auto using HapMap3 variants |
Variants | |
Original Genome Build | GRCh37 |
Number of Variants | 955,439 |
Effect Weight Type | beta |
PGS Source | |
PGS Catalog Publication (PGP) ID | PGP000263 |
Citation (link to publication) | Privé F et al. Am J Hum Genet (2022) |
Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) | Phenotype Definitions & Methods | Age of Study Participants | Participant Follow-up Time | Additional Ancestry Description | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
— | 391,124 individuals | European | UKB | — | — | — | UK (+ Ireland) | — |
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|
PPM012519 | PSS009475| European Ancestry| 17,895 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.2185 [0.2045, 0.2324] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012520 | PSS009249| European Ancestry| 3,779 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.2126 [0.1819, 0.2429] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012521 | PSS008803| European Ancestry| 5,965 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.2127 [0.1883, 0.2369] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012522 | PSS008577| Greater Middle Eastern Ancestry| 982 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.1562 [0.0939, 0.2172] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012523 | PSS008355| South Asian Ancestry| 5,368 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.1382 [0.1118, 0.1644] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012524 | PSS008132| East Asian Ancestry| 1,598 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.1281 [0.0793, 0.1764] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012526 | PSS009023| African Ancestry| 3,156 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.0664 [0.0315, 0.1012] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM012525 | PSS007919| African Ancestry| 2,172 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.0826 [0.0405, 0.1245] | sex, age, birth date, deprivation index, 16 PCs | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS008132 | — | — | 1,598 individuals | — | East Asian | China (East Asia) | UKB | — |
PSS008355 | — | — | 5,368 individuals | — | South Asian | India (South Asia) | UKB | — |
PSS009475 | — | — | 17,895 individuals | — | European | UK (+ Ireland) | UKB | — |
PSS007919 | — | — | 2,172 individuals | — | African American or Afro-Caribbean | Carribean | UKB | — |
PSS009249 | — | — | 3,779 individuals | — | European | Poland (NE Europe) | UKB | — |
PSS009023 | — | — | 3,156 individuals | — | African unspecified | Nigeria (West Africa) | UKB | — |
PSS008577 | — | — | 982 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iran (Middle East) | UKB | — |
PSS008803 | — | — | 5,965 individuals | — | European | Italy (South Europe) | UKB | — |