Polygenic Score (PGS) ID: PGS002390

Predicted Trait
Reported Trait Chronotype (morning person)
Mapped Trait(s) chronotype measurement (EFO_0008328)
Released in PGS Catalog: June 9, 2022
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Terms and Licenses
PGS obtained from the Catalog should be cited appropriately, and used in accordance with any licensing restrictions set by the authors. See EBI Terms of Use (https://www.ebi.ac.uk/about/terms-of-use/) for additional details.

Score Details

Score Construction
PGS Name other_MORNINGPERSON.P+T.0.0001
Development Method
Name Pruning and Thresholding (P+T)
Parameters p < 0.0001
Variants
Original Genome Build GRCh37
Number of Variants 3,625
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000332
Citation (link to publication) Weissbrod O et al. Nat Genet (2022)
Ancestry Distribution
Source of Variant
Associations (GWAS)
European: 100%
301,397 individuals (100%)
PGS Evaluation
African: 25%
East Asian: 25%
European: 25%
South Asian: 25%
4 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
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Study Identifiers
Sample Numbers
Sample Ancestry
Cohort(s)
301,397 individualsEuropeanUKB
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Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

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PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source
Trait
PGS Effect Sizes
(per SD change)
Classification Metrics
Other Metrics
Covariates Included in the Model
PGS Performance:
Other Relevant Information
PPM013371PSS009715|
African Ancestry|
5,524 individuals
PGP000332 |
Weissbrod O et al. Nat Genet (2022)
Reported Trait: Chronotype (morning person)Incremental R2 (full model vs. covariates alone): 0.0009age, sex, age*sex, assessment center, genotyping array, 10 PCs
PPM013420PSS009716|
East Asian Ancestry|
827 individuals
PGP000332 |
Weissbrod O et al. Nat Genet (2022)
Reported Trait: Chronotype (morning person)Incremental R2 (full model vs. covariates alone): 0.0073age, sex, age*sex, assessment center, genotyping array, 10 PCs
PPM013469PSS009717|
European Ancestry|
39,178 individuals
PGP000332 |
Weissbrod O et al. Nat Genet (2022)
Reported Trait: Chronotype (morning person)Incremental R2 (full model vs. covariates alone): 0.0108age, sex, age*sex, assessment center, genotyping array, 10 PCs
PPM013518PSS009718|
South Asian Ancestry|
6,975 individuals
PGP000332 |
Weissbrod O et al. Nat Genet (2022)
Reported Trait: Chronotype (morning person)Incremental R2 (full model vs. covariates alone): 0.0048age, sex, age*sex, assessment center, genotyping array, 10 PCs
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Evaluated Samples

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PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods
Participant Follow-up Time
Sample Numbers
Age of Study Participants
Sample Ancestry
Additional Ancestry Description
Cohort(s)
Additional Sample/Cohort Information
PSS0097155,524 individualsAfrican unspecifiedUKB
PSS009716827 individualsEast AsianUKB
PSS00971739,178 individualsEuropeanNon-British EuropeanUKB
PSS0097186,975 individualsSouth AsianUKB
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