Predicted Trait | |
Reported Trait | Red blood cell distribution width |
Mapped Trait(s) | Red cell distribution width (EFO_0009188) |
Additional Trait Information | Red Blood Cell Dist. Width |
Score Construction | |
PGS Name | blood_RBC_DISTRIB_WIDTH.P+T.0.0001 |
Development Method | |
Name | Pruning and Thresholding (P+T) |
Parameters | p < 0.0001 |
Variants | |
Original Genome Build | GRCh37 |
Number of Variants | 16,996 |
Effect Weight Type | beta |
PGS Source | |
PGS Catalog Publication (PGP) ID | PGP000332 |
Citation (link to publication) | Weissbrod O et al. Nat Genet (2022) |
Ancestry Distribution | |
Source of Variant Associations (GWAS) | European: 100% 325,395 individuals (100%) |
PGS Evaluation | African: 25% East Asian: 25% European: 25% South Asian: 25% 4 Sample Sets |
Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) |
---|---|---|---|
— | 325,395 individuals | European | UKB |
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|
PPM013399 | PSS009827| African Ancestry| 5,990 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Red Blood Cell Distribution Width | — | — | Incremental R2 (full model vs. covariates alone): 0.0 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
PPM013448 | PSS009828| East Asian Ancestry| 888 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Red Blood Cell Distribution Width | — | — | Incremental R2 (full model vs. covariates alone): 0.0576 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
PPM013497 | PSS009829| European Ancestry| 41,837 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Red Blood Cell Distribution Width | — | — | Incremental R2 (full model vs. covariates alone): 0.0994 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
PPM013546 | PSS009830| South Asian Ancestry| 7,623 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Red Blood Cell Distribution Width | — | — | Incremental R2 (full model vs. covariates alone): 0.0649 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS009828 | — | — | 888 individuals | — | East Asian | — | UKB | — |
PSS009829 | — | — | 41,837 individuals | — | European | Non-British European | UKB | — |
PSS009830 | — | — | 7,623 individuals | — | South Asian | — | UKB | — |
PSS009827 | — | — | 5,990 individuals | — | African unspecified | — | UKB | — |