Polygenic Score (PGS) ID: PGS002469

Predicted Trait
Reported Trait Smoking status
Mapped Trait(s) smoking status measurement (EFO_0006527)
Released in PGS Catalog: June 9, 2022
Download Score FTP directory
Terms and Licenses
PGS obtained from the Catalog should be cited appropriately, and used in accordance with any licensing restrictions set by the authors. See EBI Terms of Use (https://www.ebi.ac.uk/about/terms-of-use/) for additional details.

Score Details

Score Construction
PGS Name cov_SMOKING_STATUS.P+T.0.001
Development Method
Name Pruning and Thresholding (P+T)
Parameters p < 0.001
Variants
Original Genome Build GRCh37
Number of Variants 17,774
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000332
Citation (link to publication) Weissbrod O et al. Nat Genet (2022)
Ancestry Distribution
Source of Variant
Associations (GWAS)
European: 100%
336,312 individuals (100%)
PGS Evaluation
African: 25%
East Asian: 25%
European: 25%
South Asian: 25%
4 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
— 336,312 individuals European UKB

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM013597 PSS009835|
African Ancestry|
6,455 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Smoking status — — Incremental R2 (full model vs. covariates alone): 0.0002 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013646 PSS009836|
East Asian Ancestry|
920 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Smoking status — — Incremental R2 (full model vs. covariates alone): 0.0002 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013695 PSS009837|
European Ancestry|
43,338 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Smoking status — — Incremental R2 (full model vs. covariates alone): 0.0039 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013744 PSS009838|
South Asian Ancestry|
8,007 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Smoking status — — Incremental R2 (full model vs. covariates alone): 0.001 age, sex, age*sex, assessment center, genotyping array, 10 PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS009836 — — 920 individuals — East Asian — UKB —
PSS009837 — — 43,338 individuals — European Non-British European UKB —
PSS009838 — — 8,007 individuals — South Asian — UKB —
PSS009835 — — 6,455 individuals — African unspecified — UKB —