Polygenic Score (PGS) ID: PGS002803

Predicted Trait
Reported Trait Height
Mapped Trait(s) body height (EFO_0004339)
Released in PGS Catalog: Oct. 19, 2022
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Terms and Licenses
PGS obtained from the Catalog should be cited appropriately, and used in accordance with any licensing restrictions set by the authors. See EBI Terms of Use (https://www.ebi.ac.uk/about/terms-of-use/) for additional details.

Score Details

Score Construction
PGS Name GIANT_HEIGHT_YENGO_2022_PGS_WEIGHTS_EAS
Development Method
Name SBayesC
Parameters NR
Variants
Original Genome Build hg19
Number of Variants 990,792
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000382
Citation (link to publication) Yengo L et al. Nature (2022)
Ancestry Distribution
Source of Variant
Associations (GWAS)
East Asian: 100%
472,730 individuals (100%)
PGS Evaluation
East Asian: 100%
1 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
— 472,730 individuals East Asian 23 cohorts
  • 23andMe
  • ,BBJ
  • ,BES
  • ,CAGE
  • ,CAGE-Amagasaki
  • ,CAGE-KING
  • ,CHNS
  • ,CKB
  • ,CLHNS
  • ,DC
  • ,JPDSC
  • ,KARE
  • ,Living-Biobank
  • ,Nagahama_Study
  • ,SBCS
  • ,SCES
  • ,SCHS
  • ,SIMES
  • ,SINDI
  • ,SP2
  • ,SWHS
  • ,TUDR
  • ,TWT2D

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM015530 PSS009972|
East Asian Ancestry|
2,246 individuals
 PGP000382 |
Yengo L et al. Nature (2022)
 Reported Trait: Height — — R²: 0.157 age, sex and 10 genetic principal components —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS009972 — — 2,246 individuals — East Asian — UKB —