Predicted Trait | |
Reported Trait | Polyunsatturated fatty acids |
Mapped Trait(s) | polyunsaturated fatty acid measurement (EFO_0010733) |
Additional Trait Information | Polyunsaturated Fatty Acids; Quantitative |
Score Construction | |
PGS Name | ExPRSweb_PUFAs_MAGNETIC-otPUFA_LASSOSUM_UKB_20211120 |
Development Method | |
Name | lassosum |
Parameters | Lassosum 0.4.4 (MAF >= 1%; autosomal variants only)s=0.2;Lambda=0.01438 |
Variants | |
Original Genome Build | GRCh37 |
Number of Variants | 378,933 |
Effect Weight Type | beta |
PGS Source | |
PGS Catalog Publication (PGP) ID | PGP000393 |
Citation (link to publication) | Ma Y et al. Am J Hum Genet (2022) |
Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) |
---|---|---|---|
GWAS Catalog: GCST90132739 |
13,549 individuals | European | NR |
Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) | Phenotype Definitions & Methods | Age of Study Participants | Participant Follow-up Time | Additional Ancestry Description | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
— | 87,079 individuals | European | NR | Field ID: 100007; Quantitative | — | — | — | — |
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|
PPM015928 | PSS010031| European Ancestry| 87,079 individuals |
PGP000393 | Ma Y et al. Am J Hum Genet (2022) |
Reported Trait: Polyunsatturated Fatty Acids | β: -0.0238 (0.0247) | — | R²: 7.08e-06 | Sex,birthYear,genotyping.array,PC1,PC2,PC3,PC4 | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS010031 | Field ID: 100007; Quantitative | — | 87,079 individuals | — | European | — | UKB | — |