Predicted Trait | |
Reported Trait | Triglycerides |
Mapped Trait(s) | triglyceride measurement (EFO_0004530) |
Additional Trait Information | Triglycerides (quantile); Quantitative |
Score Construction | |
PGS Name | ExPRSweb_TG_30870-irnt_PLINK_MGI_20211120 |
Development Method | |
Name | PLINK |
Parameters | LD Clumping through Plink1.9 & P-value threshold <=6.31e-05 |
Variants | |
Original Genome Build | GRCh37 |
Number of Variants | 13,680 |
Effect Weight Type | beta |
PGS Source | |
PGS Catalog Publication (PGP) ID | PGP000393 |
Citation (link to publication) | Ma Y et al. Am J Hum Genet (2022) |
Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) |
---|---|---|---|
343,992 individuals | European | UKB |
Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) | Phenotype Definitions & Methods | Age of Study Participants | Participant Follow-up Time | Additional Ancestry Description | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
— | 9,592 individuals | European | MGI | TRIGLYCERIDES (LOINC: 2571-8); Quantitative | — | — | — | — |
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|
PPM016039 | PSS010016| European Ancestry| 9,592 individuals |
PGP000393 | Ma Y et al. Am J Hum Genet (2022) |
Reported Trait: Triglycerides | β: 19.5 (0.588) | — | R²: 0.0913 | SEX,AGE,Batch,PC1,PC2,PC3,PC4 | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS010016 | TRIGLYCERIDES (LOINC: 2571-8); Quantitative | — | 9,592 individuals | — | European | — | MGI | — |