Predicted Trait | |
Reported Trait | Hip circumference |
Mapped Trait(s) | hip circumference (EFO_0005093) |
Additional Trait Information | http://ipgs.mit.edu/tanigawakellis2023/INI49 |
Score Construction | |
PGS Name | INI49 |
Development Method | |
Name | snpnet |
Parameters | inclusive PGS |
Variants | |
Original Genome Build | GRCh37 |
Number of Variants | 32,756 |
Effect Weight Type | beta |
PGS Source | |
PGS Catalog Publication (PGP) ID | PGP000502 |
Citation (link to publication) | Tanigawa Y et al. AJHG (2023) |
Ancestry Distribution | |
Score Development/Training | |
PGS Evaluation |
Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) | Phenotype Definitions & Methods | Age of Study Participants | Participant Follow-up Time | Additional Ancestry Description | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
— | 324,569 individuals | European, South Asian, African unspecified, Other admixed ancestry | UKB | — | — | — | European, South Asian, African unspecified, Other admixed ancestry | — |
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|
PPM018789 | PSS011148| European Ancestry| 67,624 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Hip circumference | — | — | R²: 0.10669 [0.1023, 0.11109] PGS R2 (no covariates): 0.10277 [0.09844, 0.1071] Incremental R2 (full-covars): 0.10175 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
PPM018790 | PSS011103| European Ancestry| 2,885 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Hip circumference | — | — | R²: 0.10294 [0.08199, 0.12388] PGS R2 (no covariates): 0.1049 [0.0838, 0.126] Incremental R2 (full-covars): 0.102 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
PPM018791 | PSS011117| South Asian Ancestry| 1,473 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Hip circumference | — | — | R²: 0.0983 [0.06963, 0.12697] Incremental R2 (full-covars): 0.07962 PGS R2 (no covariates): 0.08534 [0.05824, 0.11244] |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
PPM018792 | PSS011160| African Ancestry| 1,195 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Hip circumference | — | — | R²: 0.01885 [0.00373, 0.03396] PGS R2 (no covariates): 0.01479 [0.00134, 0.02824] Incremental R2 (full-covars): 0.01389 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
PPM018793 | PSS011174| Multi-ancestry (excluding European)| 7,971 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Hip circumference | — | — | R²: 0.12987 [0.11614, 0.1436] PGS R2 (no covariates): 0.09021 [0.07824, 0.10217] Incremental R2 (full-covars): 0.07349 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS011174 | — | — | 7,971 individuals | — | East Asian, Other admixed ancestry | East Asian, Other admixed ancestry | UKB | — |
PSS011148 | — | — | 67,624 individuals | — | European (white British ancestry) |
— | UKB | — |
PSS011117 | — | — | 1,473 individuals | — | South Asian | — | UKB | — |
PSS011160 | — | — | 1,195 individuals | — | African unspecified | — | UKB | — |
PSS011103 | — | — | 2,885 individuals | — | European (non-white British ancestry) |
— | UKB | — |