Polygenic Score (PGS) ID: PGS004119

Predicted Trait
Reported Trait Height
Mapped Trait(s) body height (EFO_0004339)
Released in PGS Catalog: Dec. 19, 2023
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Score Details

Score Construction
PGS Name pt_clump.auto.GCST90018959.Height
Development Method
Name pt_clump.auto
Parameters r2 = 0.1, window = 250kb, p = 1e-23
Variants
Original Genome Build GRCh38
Number of Variants 2,632
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000517
Citation (link to publication) Monti R et al. Am J Hum Genet (2024)
Ancestry Distribution
Source of Variant
Associations (GWAS)
European: 68.6%
East Asian: 31.4%
525,444 individuals (100%)
PGS Evaluation
European: 60%
South Asian: 40%
5 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
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Study Identifiers
Sample Numbers
Sample Ancestry
Cohort(s)
GWAS Catalog: GCST90018959
Europe PMC: 34594039
360,388 individualsEuropeanNR
GWAS Catalog: GCST90018959
Europe PMC: 34594039
165,056 individualsEast AsianNR
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Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

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PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source
Trait
PGS Effect Sizes
(per SD change)
Classification Metrics
Other Metrics
Covariates Included in the Model
PGS Performance:
Other Relevant Information
PPM020060PSS011219|
European Ancestry|
190,013 individuals
PGP000517 |
Monti R et al. Am J Hum Genet (2024)
Reported Trait: Heightβ: 0.29998 [0.29569282, 0.30427133]: 0.08999 [0.08743424, 0.09258104]0beta = sd_trait/sd_pgs = pearson correlation
PPM020061PSS011230|
European Ancestry|
267,343 individuals
PGP000517 |
Monti R et al. Am J Hum Genet (2024)
Reported Trait: Heightβ: 0.26981 [0.26616479, 0.27346495]: 0.0728 [0.0708437, 0.07478308]0beta = sd_trait/sd_pgs = pearson correlation
PPM020062PSS011243|
South Asian Ancestry|
34,089 individuals
PGP000517 |
Monti R et al. Am J Hum Genet (2024)
Reported Trait: Heightβ: 0.25362 [0.24335441, 0.26389185]: 0.06432 [0.05922137, 0.06963891]0beta = sd_trait/sd_pgs = pearson correlation
PPM020063PSS011259|
European Ancestry|
66,700 individuals
PGP000517 |
Monti R et al. Am J Hum Genet (2024)
Reported Trait: Heightβ: 0.27669 [0.26939582, 0.2839815]: 0.07656 [0.07257411, 0.08064549]0beta = sd_trait/sd_pgs = pearson correlation
PPM020064PSS011287|
South Asian Ancestry|
9,108 individuals
PGP000517 |
Monti R et al. Am J Hum Genet (2024)
Reported Trait: Heightβ: 0.24036 [0.22042282, 0.26029703]: 0.05777 [0.04858622, 0.06775454]0beta = sd_trait/sd_pgs = pearson correlation
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Evaluated Samples

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PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods
Participant Follow-up Time
Sample Numbers
Age of Study Participants
Sample Ancestry
Additional Ancestry Description
Cohort(s)
Additional Sample/Cohort Information
PSS011219190,013 individualsEuropeanEB
PSS011230267,343 individualsEuropeanFinnGen
PSS01124334,089 individualsSouth AsianG&H
PSS01125966,700 individualsEuropeanHUNT
PSS0112879,108 individualsSouth AsianUKB
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