| Publication Information (EuropePMC) | |
| Title | Biobank-scale methods and projections for sparse polygenic prediction from machine learning. |
| PubMed ID | 37468507(Europe PMC) |
| doi | 10.1038/s41598-023-37580-5 |
| Publication Date | July 19, 2023 |
| Journal | Sci Rep |
| Author(s) | Raben TG, Lello L, Widen E, Hsu SDH. |
| Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants |
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link) |
|---|---|---|---|---|---|---|
| PGS004168 (bc_3) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Breast cancer | breast carcinoma | 4,618 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004168/ScoringFiles/PGS004168.txt.gz |
| PGS004174 (t1d_4) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Type 1 diabetes | type 1 diabetes mellitus | 49 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004174/ScoringFiles/PGS004174.txt.gz |
| PGS004180 (asthma_5) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Asthma | asthma | 3,641 | - - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004180/ScoringFiles/PGS004180.txt.gz |
| PGS004181 (t2d_1) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Type 2 diabetes | type 2 diabetes mellitus | 10,202 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004181/ScoringFiles/PGS004181.txt.gz |
| PGS004186 (afib_1) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Atrial fibrillation | atrial fibrillation | 3,082 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004186/ScoringFiles/PGS004186.txt.gz |
| PGS004188 (afib_3) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Atrial fibrillation | atrial fibrillation | 2,420 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004188/ScoringFiles/PGS004188.txt.gz |
| PGS004201 (lpa_1) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Lipoprotein A | lipoprotein A measurement | 8,725 | - - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004201/ScoringFiles/PGS004201.txt.gz |
| PGS004203 (lpa_3) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Lipoprotein A | lipoprotein A measurement | 6,935 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004203/ScoringFiles/PGS004203.txt.gz |
| PGS004208 (db_3) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Direct bilirubin | bilirubin measurement | 6,404 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004208/ScoringFiles/PGS004208.txt.gz |
| PGS004213 (height_3) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Standing height | body height | 21,984 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004213/ScoringFiles/PGS004213.txt.gz |
| PGS004170 (bc_5) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Breast cancer | breast carcinoma | 2,278 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004170/ScoringFiles/PGS004170.txt.gz |
| PGS004171 (t1d_1) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Type 1 diabetes | type 1 diabetes mellitus | 520 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004171/ScoringFiles/PGS004171.txt.gz |
| PGS004172 (t1d_2) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Type 1 diabetes | type 1 diabetes mellitus | 70 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004172/ScoringFiles/PGS004172.txt.gz |
| PGS004173 (t1d_3) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Type 1 diabetes | type 1 diabetes mellitus | 295 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004173/ScoringFiles/PGS004173.txt.gz |
| PGS004175 (t1d_5) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Type 1 diabetes | type 1 diabetes mellitus | 315 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004175/ScoringFiles/PGS004175.txt.gz |
| PGS004178 (asthma_3) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Asthma | asthma | 4,924 | - - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004178/ScoringFiles/PGS004178.txt.gz |
| PGS004177 (asthma_2) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Asthma | asthma | 6,770 | - - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004177/ScoringFiles/PGS004177.txt.gz |
| PGS004179 (asthma_4) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Asthma | asthma | 3,963 | - - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004179/ScoringFiles/PGS004179.txt.gz |
| PGS004183 (t2d_3) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Type 2 diabetes | type 2 diabetes mellitus | 8,154 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004183/ScoringFiles/PGS004183.txt.gz |
| PGS004212 (height_2) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Standing height | body height | 27,779 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004212/ScoringFiles/PGS004212.txt.gz |
| PGS004187 (afib_2) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Atrial fibrillation | atrial fibrillation | 5,118 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004187/ScoringFiles/PGS004187.txt.gz |
| PGS004189 (afib_4) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Atrial fibrillation | atrial fibrillation | 3,434 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004189/ScoringFiles/PGS004189.txt.gz |
| PGS004190 (afib_5) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Atrial fibrillation | atrial fibrillation | 1,972 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004190/ScoringFiles/PGS004190.txt.gz |
| PGS004191 (hyper_1) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Hypertension | hypertension | 23,280 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004191/ScoringFiles/PGS004191.txt.gz |
| PGS004192 (hyper_2) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Hypertension | hypertension | 9,430 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004192/ScoringFiles/PGS004192.txt.gz |
| PGS004193 (hyper_3) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Hypertension | hypertension | 18,580 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004193/ScoringFiles/PGS004193.txt.gz |
| PGS004194 (hyper_4) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Hypertension | hypertension | 14,063 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004194/ScoringFiles/PGS004194.txt.gz |
| PGS004202 (lpa_2) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Lipoprotein A | lipoprotein A measurement | 8,714 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004202/ScoringFiles/PGS004202.txt.gz |
| PGS004204 (lpa_4) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Lipoprotein A | lipoprotein A measurement | 6,927 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004204/ScoringFiles/PGS004204.txt.gz |
| PGS004205 (lpa_5) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Lipoprotein A | lipoprotein A measurement | 8,737 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004205/ScoringFiles/PGS004205.txt.gz |
| PGS004206 (db_1) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Direct bilirubin | bilirubin measurement | 6,379 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004206/ScoringFiles/PGS004206.txt.gz |
| PGS004207 (db_2) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Direct bilirubin | bilirubin measurement | 7,438 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004207/ScoringFiles/PGS004207.txt.gz |
| PGS004210 (db_5) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Direct bilirubin | bilirubin measurement | 5,417 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004210/ScoringFiles/PGS004210.txt.gz |
| PGS004211 (height_1) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Standing height | body height | 21,950 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004211/ScoringFiles/PGS004211.txt.gz |
| PGS004215 (height_5) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Standing height | body height | 22,938 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004215/ScoringFiles/PGS004215.txt.gz |
| PGS004217 (bmi_2) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Body mass index | body mass index | 24,706 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004217/ScoringFiles/PGS004217.txt.gz |
| PGS004218 (bmi_3) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Body mass index | body mass index | 22,176 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004218/ScoringFiles/PGS004218.txt.gz |
| PGS004219 (bmi_4) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Body mass index | body mass index | 25,971 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004219/ScoringFiles/PGS004219.txt.gz |
| PGS004199 (cad_4) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Coronary artery disease | coronary artery disease | 6,085 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004199/ScoringFiles/PGS004199.txt.gz |
| PGS004216 (bmi_1) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Body mass index | body mass index | 24,059 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004216/ScoringFiles/PGS004216.txt.gz |
| PGS004220 (bmi_5) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Body mass index | body mass index | 24,026 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004220/ScoringFiles/PGS004220.txt.gz |
| PGS004166 (bc_1) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Breast cancer | breast carcinoma | 3,920 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004166/ScoringFiles/PGS004166.txt.gz |
| PGS004167 (bc_2) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Breast cancer | breast carcinoma | 717 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004167/ScoringFiles/PGS004167.txt.gz |
| PGS004169 (bc_4) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Breast cancer | breast carcinoma | 1,361 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004169/ScoringFiles/PGS004169.txt.gz |
| PGS004176 (asthma_1) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Asthma | asthma | 5,210 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004176/ScoringFiles/PGS004176.txt.gz |
| PGS004182 (t2d_2) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Type 2 diabetes | type 2 diabetes mellitus | 10,778 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004182/ScoringFiles/PGS004182.txt.gz |
| PGS004184 (t2d_4) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Type 2 diabetes | type 2 diabetes mellitus | 9,645 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004184/ScoringFiles/PGS004184.txt.gz |
| PGS004185 (t2d_5) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Type 2 diabetes | type 2 diabetes mellitus | 3,277 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004185/ScoringFiles/PGS004185.txt.gz |
| PGS004195 (hyper_5) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Hypertension | hypertension | 2,755 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004195/ScoringFiles/PGS004195.txt.gz |
| PGS004196 (cad_1) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Coronary artery disease | coronary artery disease | 3,892 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004196/ScoringFiles/PGS004196.txt.gz |
| PGS004197 (cad_2) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Coronary artery disease | coronary artery disease | 11,490 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004197/ScoringFiles/PGS004197.txt.gz |
| PGS004198 (cad_3) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Coronary artery disease | coronary artery disease | 5,723 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004198/ScoringFiles/PGS004198.txt.gz |
| PGS004200 (cad_5) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Coronary artery disease | coronary artery disease | 8,361 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004200/ScoringFiles/PGS004200.txt.gz |
| PGS004209 (db_4) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Direct bilirubin | bilirubin measurement | 2,507 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004209/ScoringFiles/PGS004209.txt.gz |
| PGS004214 (height_4) |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Standing height | body height | 23,686 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004214/ScoringFiles/PGS004214.txt.gz |
|
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|---|
| PPM020099 | PGS004166 (bc_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Breast cancer | — | AUROC: 0.64831 | — | year of birth | — |
| PPM020100 | PGS004167 (bc_2) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Breast cancer | — | AUROC: 0.64213 | — | year of birth | — |
| PPM020101 | PGS004168 (bc_3) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Breast cancer | — | AUROC: 0.64699 | — | year of birth | — |
| PPM020102 | PGS004169 (bc_4) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Breast cancer | — | AUROC: 0.64504 | — | year of birth | — |
| PPM020103 | PGS004170 (bc_5) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Breast cancer | — | AUROC: 0.64455 | — | year of birth | — |
| PPM020104 | PGS004171 (t1d_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Type 1 diabetes | — | AUROC: 0.7 | — | year of birth, sex | — |
| PPM020105 | PGS004172 (t1d_2) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Type 1 diabetes | — | AUROC: 0.71 | — | year of birth, sex | — |
| PPM020106 | PGS004173 (t1d_3) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Type 1 diabetes | — | AUROC: 0.71 | — | year of birth, sex | — |
| PPM020107 | PGS004174 (t1d_4) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Type 1 diabetes | — | AUROC: 0.71 | — | year of birth, sex | — |
| PPM020108 | PGS004175 (t1d_5) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Type 1 diabetes | — | AUROC: 0.7 | — | year of birth, sex | — |
| PPM020109 | PGS004176 (asthma_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Asthma | — | AUROC: 0.62651 | — | year of birth, sex | — |
| PPM020110 | PGS004176 (asthma_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Asthma | — | AUROC: 0.62694 | — | year of birth, sex | — |
| PPM020111 | PGS004176 (asthma_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Asthma | — | AUROC: 0.62779 | — | year of birth, sex | — |
| PPM020112 | PGS004176 (asthma_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Asthma | — | AUROC: 0.62504 | — | year of birth, sex | — |
| PPM020113 | PGS004176 (asthma_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Asthma | — | AUROC: 0.62557 | — | year of birth, sex | — |
| PPM020115 | PGS004182 (t2d_2) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Type 2 diabetes | — | AUROC: 0.69491 | — | year of birth, sex | — |
| PPM020116 | PGS004183 (t2d_3) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Type 2 diabetes | — | AUROC: 0.69959 | — | year of birth, sex | — |
| PPM020117 | PGS004184 (t2d_4) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Type 2 diabetes | — | AUROC: 0.69539 | — | year of birth, sex | — |
| PPM020118 | PGS004185 (t2d_5) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Type 2 diabetes | — | AUROC: 0.69924 | — | year of birth, sex | — |
| PPM020119 | PGS004186 (afib_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Atrial fibrillation | — | AUROC: 0.73831 | — | year of birth, sex | — |
| PPM020120 | PGS004186 (afib_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Atrial fibrillation | — | AUROC: 0.73501 | — | year of birth, sex | — |
| PPM020121 | PGS004187 (afib_2) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Atrial fibrillation | — | AUROC: 0.74377 | — | year of birth, sex | — |
| PPM020122 | PGS004188 (afib_3) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Atrial fibrillation | — | AUROC: 0.73914 | — | year of birth, sex | — |
| PPM020123 | PGS004189 (afib_4) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Atrial fibrillation | — | AUROC: 0.74461 | — | year of birth, sex | — |
| PPM020124 | PGS004190 (afib_5) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Hypertension | — | AUROC: 0.69573 | — | year of birth, sex | — |
| PPM020126 | PGS004192 (hyper_2) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Hypertension | — | AUROC: 0.70254 | — | year of birth, sex | — |
| PPM020127 | PGS004193 (hyper_3) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Hypertension | — | AUROC: 0.70358 | — | year of birth, sex | — |
| PPM020128 | PGS004194 (hyper_4) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Hypertension | — | AUROC: 0.69503 | — | year of birth, sex | — |
| PPM020129 | PGS004195 (hyper_5) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Coronary artery disease | — | AUROC: 0.75746 | — | year of birth, sex | — |
| PPM020130 | PGS004196 (cad_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Coronary artery disease | — | AUROC: 0.74561 | — | year of birth, sex | — |
| PPM020131 | PGS004197 (cad_2) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Coronary artery disease | — | AUROC: 0.75684 | — | year of birth, sex | — |
| PPM020132 | PGS004198 (cad_3) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Coronary artery disease | — | AUROC: 0.75212 | — | year of birth, sex | — |
| PPM020133 | PGS004199 (cad_4) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Coronary artery disease | — | AUROC: 0.75031 | — | year of birth, sex | — |
| PPM020135 | PGS004202 (lpa_2) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Lipoprotein A | — | — | R²: 0.577 | year of birth, sex | — |
| PPM020136 | PGS004203 (lpa_3) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Lipoprotein A | — | — | R²: 0.577 | year of birth, sex | — |
| PPM020137 | PGS004204 (lpa_4) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Lipoprotein A | — | — | R²: 0.577 | year of birth, sex | — |
| PPM020138 | PGS004205 (lpa_5) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Lipoprotein A | — | — | R²: 0.576 | year of birth, sex | — |
| PPM020139 | PGS004206 (db_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Direct bilirubin | — | — | R²: 0.28979 | year of birth, sex | — |
| PPM020140 | PGS004207 (db_2) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Direct bilirubin | — | — | R²: 0.28979 | year of birth, sex | — |
| PPM020141 | PGS004208 (db_3) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Direct bilirubin | — | — | R²: 0.28979 | year of birth, sex | — |
| PPM020142 | PGS004209 (db_4) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Direct bilirubin | — | — | R²: 0.28842 | year of birth, sex | — |
| PPM020144 | PGS004211 (height_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Standing height | — | — | R²: 0.71113 | year of birth, sex | — |
| PPM020145 | PGS004212 (height_2) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Standing height | — | — | R²: 0.71242 | year of birth, sex | — |
| PPM020146 | PGS004213 (height_3) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Standing height | — | — | R²: 0.71113 | year of birth, sex | — |
| PPM020147 | PGS004214 (height_4) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Standing height | — | — | R²: 0.71242 | year of birth, sex | — |
| PPM020148 | PGS004215 (height_5) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Standing height | — | — | R²: 0.71242 | year of birth, sex | — |
| PPM020149 | PGS004216 (bmi_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Body mass index (weight/height) | — | — | R²: 0.13038 | year of birth, sex | — |
| PPM020150 | PGS004217 (bmi_2) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Body mass index (weight/height) | — | — | R²: 0.13102 | year of birth, sex | — |
| PPM020152 | PGS004219 (bmi_4) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Body mass index (weight/height) | — | — | R²: 0.12915 | year of birth, sex | — |
| PPM020153 | PGS004220 (bmi_5) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Body mass index (weight/height) | — | — | R²: 0.13038 | year of birth, sex | — |
| PPM020114 | PGS004181 (t2d_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Type 2 diabetes | — | AUROC: 0.69418 | — | year of birth, sex | — |
| PPM020125 | PGS004191 (hyper_1) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Hypertension | — | AUROC: 0.70167 | — | year of birth, sex | — |
| PPM020134 | PGS004200 (cad_5) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Lipoprotein A | — | — | R²: 0.57648 | year of birth, sex | — |
| PPM020143 | PGS004210 (db_5) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Direct bilirubin | — | — | R²: 0.28979 | year of birth, sex | — |
| PPM020151 | PGS004218 (bmi_3) |
PSS011296| European Ancestry| 45,334 individuals |
PGP000520 | Raben TG et al. Sci Rep (2023) |
Reported Trait: Body mass index (weight/height) | — | — | R²: 0.13038 | year of birth, sex | — |
|
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
|---|---|---|---|---|---|---|---|---|
| PSS011296 | 22,667 sibling pairs | — | 45,334 individuals | — | European | — | UKB | — |