| Publication Information (EuropePMC) | |
| Title | The power of genetic diversity in genome-wide association studies of lipids. |
| PubMed ID | 34887591(Europe PMC) |
| doi | https://doi.org/10.1038/s41586-021-04064-3 |
| Publication Date | Dec. 9, 2021 |
| Journal | Nature |
| Author(s) | Graham SE, Clarke SL, Wu KH, Kanoni S, Zajac GJM, Ramdas S, Surakka I, Ntalla I, Vedantam S, Winkler TW, Locke AE, Marouli E, Hwang MY, Han S, Narita A, Choudhury A, Bentley AR, Ekoru K, Verma A, Trivedi B, Martin HC, Hunt KA, Hui Q, Klarin D, Zhu X, Thorleifsson G, Helgadottir A, Gudbjartsson DF, Holm H, Olafsson I, Akiyama M, Sakaue S, Terao C, Kanai M, Zhou W, Brumpton BM, Rasheed H, Ruotsalainen SE, Havulinna AS, Veturi Y, Feng Q, Rosenthal EA, Lingren T, Pacheco JA, Pendergrass SA, Haessler J, Giulianini F, Bradford Y, Miller JE, Campbell A, Lin K, Millwood IY, Hindy G, Rasheed A, Faul JD, Zhao W, Weir DR, Turman C, Huang H, Graff M, Mahajan A, Brown MR, Zhang W, Yu K, Schmidt EM, Pandit A, Gustafsson S, Yin X, Luan J, Zhao JH, Matsuda F, Jang HM, Yoon K, Medina-Gomez C, Pitsillides A, Hottenga JJ, Willemsen G, Wood AR, Ji Y, Gao Z, Haworth S, Mitchell RE, Chai JF, Aadahl M, Yao J, Manichaikul A, Warren HR, Ramirez J, Bork-Jensen J, Kårhus LL, Goel A, Sabater-Lleal M, Noordam R, Sidore C, Fiorillo E, McDaid AF, Marques-Vidal P, Wielscher M, Trompet S, Sattar N, Møllehave LT, Thuesen BH, Munz M, Zeng L, Huang J, Yang B, Poveda A, Kurbasic A, Lamina C, Forer L, Scholz M, Galesloot TE, Bradfield JP, Daw EW, Zmuda JM, Mitchell JS, Fuchsberger C, Christensen H, Brody JA, Feitosa MF, Wojczynski MK, Preuss M, Mangino M, Christofidou P, Verweij N, Benjamins JW, Engmann J, Kember RL, Slieker RC, Lo KS, Zilhao NR, Le P, Kleber ME, Delgado GE, Huo S, Ikeda DD, Iha H, Yang J, Liu J, Leonard HL, Marten J, Schmidt B, Arendt M, Smyth LJ, Cañadas-Garre M, Wang C, Nakatochi M, Wong A, Hutri-Kähönen N, Sim X, Xia R, Huerta-Chagoya A, Fernandez-Lopez JC, Lyssenko V, Ahmed M, Jackson AU, Irvin MR, Oldmeadow C, Kim HN, Ryu S, Timmers PRHJ, Arbeeva L, Dorajoo R, Lange LA, Chai X, Prasad G, Lorés-Motta L, Pauper M, Long J, Li X, Theusch E, Takeuchi F, Spracklen CN, Loukola A, Bollepalli S, Warner SC, Wang YX, Wei WB, Nutile T, Ruggiero D, Sung YJ, Hung YJ, Chen S, Liu F, Yang J, Kentistou KA, Gorski M, Brumat M, Meidtner K, Bielak LF, Smith JA, Hebbar P, Farmaki AE, Hofer E, Lin M, Xue C, Zhang J, Concas MP, Vaccargiu S, van der Most PJ, Pitkänen N, Cade BE, Lee J, van der Laan SW, Chitrala KN, Weiss S, Zimmermann ME, Lee JY, Choi HS, Nethander M, Freitag-Wolf S, Southam L, Rayner NW, Wang CA, Lin SY, Wang JS, Couture C, Lyytikäinen LP, Nikus K, Cuellar-Partida G, Vestergaard H, Hildalgo B, Giannakopoulou O, Cai Q, Obura MO, van Setten J, Li X, Schwander K, Terzikhan N, Shin JH, Jackson RD, Reiner AP, Martin LW, Chen Z, Li L, Highland HM, Young KL, Kawaguchi T, Thiery J, Bis JC, Nadkarni GN, Launer LJ, Li H, Nalls MA, Raitakari OT, Ichihara S, Wild SH, Nelson CP, Campbell H, Jäger S, Nabika T, Al-Mulla F, Niinikoski H, Braund PS, Kolcic I, Kovacs P, Giardoglou T, Katsuya T, Bhatti KF, de Kleijn D, de Borst GJ, Kim EK, Adams HHH, Ikram MA, Zhu X, Asselbergs FW, Kraaijeveld AO, Beulens JWJ, Shu XO, Rallidis LS, Pedersen O, Hansen T, Mitchell P, Hewitt AW, Kähönen M, Pérusse L, Bouchard C, Tönjes A, Chen YI, Pennell CE, Mori TA, Lieb W, Franke A, Ohlsson C, Mellström D, Cho YS, Lee H, Yuan JM, Koh WP, Rhee SY, Woo JT, Heid IM, Stark KJ, Völzke H, Homuth G, Evans MK, Zonderman AB, Polasek O, Pasterkamp G, Hoefer IE, Redline S, Pahkala K, Oldehinkel AJ, Snieder H, Biino G, Schmidt R, Schmidt H, Chen YE, Bandinelli S, Dedoussis G, Thanaraj TA, Kardia SLR, Kato N, Schulze MB, Girotto G, Jung B, Böger CA, Joshi PK, Bennett DA, De Jager PL, Lu X, Mamakou V, Brown M, Caulfield MJ, Munroe PB, Guo X, Ciullo M, Jonas JB, Samani NJ, Kaprio J, Pajukanta P, Adair LS, Bechayda SA, de Silva HJ, Wickremasinghe AR, Krauss RM, Wu JY, Zheng W, den Hollander AI, Bharadwaj D, Correa A, Wilson JG, Lind L, Heng CK, Nelson AE, Golightly YM, Wilson JF, Penninx B, Kim HL, Attia J, Scott RJ, Rao DC, Arnett DK, Walker M, Koistinen HA, Chandak GR, Yajnik CS, Mercader JM, Tusié-Luna T, Aguilar-Salinas CA, Villalpando CG, Orozco L, Fornage M, Tai ES, van Dam RM, Lehtimäki T, Chaturvedi N, Yokota M, Liu J, Reilly DF, McKnight AJ, Kee F, Jöckel KH, McCarthy MI, Palmer CNA, Vitart V, Hayward C, Simonsick E, van Duijn CM, Lu F, Qu J, Hishigaki H, Lin X, März W, Parra EJ, Cruz M, Gudnason V, Tardif JC, Lettre G, 't Hart LM, Elders PJM, Damrauer SM, Kumari M, Kivimaki M, van der Harst P, Spector TD, Loos RJF, Province MA, Psaty BM, Brandslund I, Pramstaller PP, Christensen K, Ripatti S, Widén E, Hakonarson H, Grant SFA, Kiemeney LALM, de Graaf J, Loeffler M, Kronenberg F, Gu D, Erdmann J, Schunkert H, Franks PW, Linneberg A, Jukema JW, Khera AV, Männikkö M, Jarvelin MR, Kutalik Z, Cucca F, Mook-Kanamori DO, van Dijk KW, Watkins H, Strachan DP, Grarup N, Sever P, Poulter N, Rotter JI, Dantoft TM, Karpe F, Neville MJ, Timpson NJ, Cheng CY, Wong TY, Khor CC, Sabanayagam C, Peters A, Gieger C, Hattersley AT, Pedersen NL, Magnusson PKE, Boomsma DI, de Geus EJC, Cupples LA, van Meurs JBJ, Ghanbari M, Gordon-Larsen P, Huang W, Kim YJ, Tabara Y, Wareham NJ, Langenberg C, Zeggini E, Kuusisto J, Laakso M, Ingelsson E, Abecasis G, Chambers JC, Kooner JS, de Vries PS, Morrison AC, North KE, Daviglus M, Kraft P, Martin NG, Whitfield JB, Abbas S, Saleheen D, Walters RG, Holmes MV, Black C, Smith BH, Justice AE, Baras A, Buring JE, Ridker PM, Chasman DI, Kooperberg C, Wei WQ, Jarvik GP, Namjou B, Hayes MG, Ritchie MD, Jousilahti P, Salomaa V, Hveem K, Åsvold BO, Kubo M, Kamatani Y, Okada Y, Murakami Y, Thorsteinsdottir U, Stefansson K, Ho YL, Lynch JA, Rader DJ, Tsao PS, Chang KM, Cho K, O'Donnell CJ, Gaziano JM, Wilson P, Rotimi CN, Hazelhurst S, Ramsay M, Trembath RC, van Heel DA, Tamiya G, Yamamoto M, Kim BJ, Mohlke KL, Frayling TM, Hirschhorn JN, Kathiresan S, VA Million Veteran Program, Global Lipids Genetics Consortium, Boehnke M, Natarajan P, Peloso GM, Brown CD, Morris AP, Assimes TL, Deloukas P, Sun YV, Willer CJ |
| Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants |
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link) |
|---|---|---|---|---|---|---|
| PGS000895 (GLGC_2021_HIS_LDL_PRS_weights_PT) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 76 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000895/ScoringFiles/PGS000895.txt.gz |
| PGS000897 (GLGC_2021_SAS_LDL_PRS_weights_PT) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 13 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000897/ScoringFiles/PGS000897.txt.gz |
| PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 295 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000887/ScoringFiles/PGS000887.txt.gz |
| PGS000890 (GLGC_2021_EAS_LDL_PRS_weights_PRS-CS) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 1,029,158 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000890/ScoringFiles/PGS000890.txt.gz |
| PGS000893 (GLGC_2021_EUR_LDL_PRS_weights_PT) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 5,427 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000893/ScoringFiles/PGS000893.txt.gz |
| PGS000896 (GLGC_2021_SAS_LDL_PRS_weights_PRS-CS) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 1,100,062 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000896/ScoringFiles/PGS000896.txt.gz |
| PGS000888 (GLGC_2021_ALL_LDL_PRS_weights_PRS-CS) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 1,239,184 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000888/ScoringFiles/PGS000888.txt.gz |
| PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 1,119,211 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000892/ScoringFiles/PGS000892.txt.gz |
| PGS000886 (GLGC_2021_AFR_LDL_PRS_weights_PRS-CS) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 1,222,318 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000886/ScoringFiles/PGS000886.txt.gz |
| PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 9,009 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000889/ScoringFiles/PGS000889.txt.gz |
| PGS000891 (GLGC_2021_EAS_LDL_PRS_weights_PT) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 66 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000891/ScoringFiles/PGS000891.txt.gz |
| PGS000894 (GLGC_2021_HIS_LDL_PRS_weights_PRS-CS) |
PGP000230 | Graham SE et al. Nature (2021) |
LDL cholesterol | low density lipoprotein cholesterol measurement | 1,175,595 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000894/ScoringFiles/PGS000894.txt.gz |
|
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|---|
| PPM002588 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001156| African Ancestry| 18,251 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.162 | sex, PC1-4, birth year, and mean age | — |
| PPM002589 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001157| Additional Asian Ancestries| 4,155 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.1 | sex, PC1-4, birth year, and mean age | — |
| PPM002590 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001158| European Ancestry| 68,381 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.158 | sex, PC1-4, birth year, and mean age | — |
| PPM002545 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001146| African Ancestry| 3,566 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.125 | age, sex, PC1-3 | — |
| PPM002546 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001144| African Ancestry| 4,273 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.114 | age, sex, PC1-3 | — |
| PPM002547 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001145| African Ancestry| 707 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.067 | age, sex, PC1-3 | — |
| PPM002548 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001146| African Ancestry| 3,566 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.123 | age, sex, PC1-3 | — |
| PPM002549 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001144| African Ancestry| 4,273 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.052 | age, sex, PC1-3 | — |
| PPM002550 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001145| African Ancestry| 707 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.063 | age, sex, PC1-3 | — |
| PPM002551 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001146| African Ancestry| 3,566 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.055 | age, sex, PC1-3 | — |
| PPM002552 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001147| African Ancestry| 10,460 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.173 | age, sex, PC1-6 | — |
| PPM002553 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001147| African Ancestry| 10,460 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.122 | age, sex, PC1-6 | — |
| PPM002555 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001148| African Ancestry| 1,745 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.069 | age, sex, PC1-6 | — |
| PPM002556 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001148| African Ancestry| 1,745 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.041 | age, sex, PC1-6 | — |
| PPM002557 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001149| African Ancestry| 4,972 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.128 | age, sex, PC1-6 | — |
| PPM002558 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001149| African Ancestry| 4,972 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.108 | age, sex, PC1-6 | — |
| PPM002559 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001149| African Ancestry| 4,972 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.04 | age, sex, PC1-6 | — |
| PPM002560 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001150| African Ancestry| 3,743 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.076 | age, sex, and PC1-4 | — |
| PPM002561 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001150| African Ancestry| 3,743 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.075 | age, sex, and PC1-4 | — |
| PPM002562 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001150| African Ancestry| 3,743 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.022 | age, sex, and PC1-4 | — |
| PPM002563 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001151| South Asian Ancestry| 15,242 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Max LDL cholesterol | — | — | R²: 0.069 | age, sex, and PC1-10 | — |
| PPM002565 | PGS000893 (GLGC_2021_EUR_LDL_PRS_weights_PT) |
PSS001151| South Asian Ancestry| 15,242 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Max LDL cholesterol | — | — | R²: 0.096 | age, sex, and PC1-10 | — |
| PPM002566 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001151| South Asian Ancestry| 15,242 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Max LDL cholesterol | — | — | R²: 0.088 | age, sex, and PC1-10 | — |
| PPM002567 | PGS000897 (GLGC_2021_SAS_LDL_PRS_weights_PT) |
PSS001151| South Asian Ancestry| 15,242 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Max LDL cholesterol | — | — | R²: 0.077 | age, sex, and PC1-10 | — |
| PPM002568 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001152| East Asian Ancestry| 118,260 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.051 | age, sex, and recruitment area | — |
| PPM002569 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001152| East Asian Ancestry| 118,260 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.095 | age, sex, and recruitment area | — |
| PPM002570 | PGS000891 (GLGC_2021_EAS_LDL_PRS_weights_PT) |
PSS001152| East Asian Ancestry| 118,260 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.098 | age, sex, and recruitment area | — |
| PPM002571 | PGS000890 (GLGC_2021_EAS_LDL_PRS_weights_PRS-CS) |
PSS001152| East Asian Ancestry| 118,260 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.094 | age, sex, and recruitment area | — |
| PPM002573 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001152| East Asian Ancestry| 118,260 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.064 | age, sex, and recruitment area | — |
| PPM002574 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001153| African Ancestry| 1,341 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.115 | sex, batch, PC1-4, and birth year | — |
| PPM002575 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001154| European Ancestry| 17,190 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.074 | sex, batch, PC1-4, and birth year | — |
| PPM002576 | PGS000886 (GLGC_2021_AFR_LDL_PRS_weights_PRS-CS) |
PSS001153| African Ancestry| 1,341 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.064 | sex, batch, PC1-4, and birth year | — |
| PPM002578 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001153| African Ancestry| 1,341 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.122 | sex, batch, PC1-4, and birth year | — |
| PPM002579 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001154| European Ancestry| 17,190 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.13 | sex, batch, PC1-4, and birth year | — |
| PPM002580 | PGS000893 (GLGC_2021_EUR_LDL_PRS_weights_PT) |
PSS001153| African Ancestry| 1,341 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.058 | sex, batch, PC1-4, and birth year | — |
| PPM002581 | PGS000893 (GLGC_2021_EUR_LDL_PRS_weights_PT) |
PSS001154| European Ancestry| 17,190 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.123 | sex, batch, PC1-4, and birth year | — |
| PPM002582 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001153| African Ancestry| 1,341 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.062 | sex, batch, PC1-4, and birth year | — |
| PPM002583 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001154| European Ancestry| 17,190 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.129 | sex, batch, PC1-4, and birth year | — |
| PPM002584 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001156| African Ancestry| 18,251 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.148 | sex, PC1-4, birth year, and mean age | — |
| PPM002585 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001157| Additional Asian Ancestries| 4,155 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.063 | sex, PC1-4, birth year, and mean age | — |
| PPM002587 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001159| Hispanic or Latin American Ancestry| 7,669 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.071 | sex, PC1-4, birth year, and mean age | — |
| PPM002591 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001159| Hispanic or Latin American Ancestry| 7,669 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.134 | sex, PC1-4, birth year, and mean age | — |
| PPM002592 | PGS000891 (GLGC_2021_EAS_LDL_PRS_weights_PT) |
PSS001156| African Ancestry| 18,251 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.056 | sex, PC1-4, birth year, and mean age | — |
| PPM002593 | PGS000891 (GLGC_2021_EAS_LDL_PRS_weights_PT) |
PSS001157| Additional Asian Ancestries| 4,155 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.098 | sex, PC1-4, birth year, and mean age | — |
| PPM002594 | PGS000891 (GLGC_2021_EAS_LDL_PRS_weights_PT) |
PSS001158| European Ancestry| 68,381 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.083 | sex, PC1-4, birth year, and mean age | — |
| PPM002595 | PGS000891 (GLGC_2021_EAS_LDL_PRS_weights_PT) |
PSS001159| Hispanic or Latin American Ancestry| 7,669 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.057 | sex, PC1-4, birth year, and mean age | — |
| PPM002596 | PGS000890 (GLGC_2021_EAS_LDL_PRS_weights_PRS-CS) |
PSS001156| African Ancestry| 18,251 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.041 | sex, PC1-4, birth year, and mean age | — |
| PPM002598 | PGS000890 (GLGC_2021_EAS_LDL_PRS_weights_PRS-CS) |
PSS001158| European Ancestry| 68,381 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.083 | sex, PC1-4, birth year, and mean age | — |
| PPM002599 | PGS000890 (GLGC_2021_EAS_LDL_PRS_weights_PRS-CS) |
PSS001159| Hispanic or Latin American Ancestry| 7,669 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.063 | sex, PC1-4, birth year, and mean age | — |
| PPM002600 | PGS000893 (GLGC_2021_EUR_LDL_PRS_weights_PT) |
PSS001156| African Ancestry| 18,251 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.042 | sex, PC1-4, birth year, and mean age | — |
| PPM002601 | PGS000893 (GLGC_2021_EUR_LDL_PRS_weights_PT) |
PSS001157| Additional Asian Ancestries| 4,155 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.066 | sex, PC1-4, birth year, and mean age | — |
| PPM002602 | PGS000893 (GLGC_2021_EUR_LDL_PRS_weights_PT) |
PSS001158| European Ancestry| 68,381 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.152 | sex, PC1-4, birth year, and mean age | — |
| PPM002603 | PGS000893 (GLGC_2021_EUR_LDL_PRS_weights_PT) |
PSS001159| Hispanic or Latin American Ancestry| 7,669 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.106 | sex, PC1-4, birth year, and mean age | — |
| PPM002604 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001156| African Ancestry| 18,251 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.04 | sex, PC1-4, birth year, and mean age | — |
| PPM002605 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001157| Additional Asian Ancestries| 4,155 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.067 | sex, PC1-4, birth year, and mean age | — |
| PPM002606 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001158| European Ancestry| 68,381 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.153 | sex, PC1-4, birth year, and mean age | — |
| PPM002607 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001159| Hispanic or Latin American Ancestry| 7,669 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.114 | sex, PC1-4, birth year, and mean age | — |
| PPM002609 | PGS000895 (GLGC_2021_HIS_LDL_PRS_weights_PT) |
PSS001157| Additional Asian Ancestries| 4,155 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.079 | sex, PC1-4, birth year, and mean age | — |
| PPM002610 | PGS000895 (GLGC_2021_HIS_LDL_PRS_weights_PT) |
PSS001158| European Ancestry| 68,381 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.119 | sex, PC1-4, birth year, and mean age | — |
| PPM002611 | PGS000895 (GLGC_2021_HIS_LDL_PRS_weights_PT) |
PSS001159| Hispanic or Latin American Ancestry| 7,669 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.102 | sex, PC1-4, birth year, and mean age | — |
| PPM002612 | PGS000897 (GLGC_2021_SAS_LDL_PRS_weights_PT) |
PSS001156| African Ancestry| 18,251 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.076 | sex, PC1-4, birth year, and mean age | — |
| PPM002613 | PGS000897 (GLGC_2021_SAS_LDL_PRS_weights_PT) |
PSS001157| Additional Asian Ancestries| 4,155 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.067 | sex, PC1-4, birth year, and mean age | — |
| PPM002614 | PGS000897 (GLGC_2021_SAS_LDL_PRS_weights_PT) |
PSS001158| European Ancestry| 68,381 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.101 | sex, PC1-4, birth year, and mean age | — |
| PPM002615 | PGS000897 (GLGC_2021_SAS_LDL_PRS_weights_PT) |
PSS001159| Hispanic or Latin American Ancestry| 7,669 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.069 | sex, PC1-4, birth year, and mean age | — |
| PPM002616 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001160| African Ancestry| 2,138 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.129 | birth year, sex, and PC1-4 | — |
| PPM002617 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001160| African Ancestry| 2,138 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.132 | birth year, sex, and PC1-4 | — |
| PPM002618 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001160| African Ancestry| 2,138 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.069 | birth year, sex, and PC1-4 | — |
| PPM002620 | PGS000890 (GLGC_2021_EAS_LDL_PRS_weights_PRS-CS) |
PSS001161| East Asian Ancestry| 28,217 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.094 | sex, age, recruitment method, and PC1-20 | — |
| PPM002621 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001161| East Asian Ancestry| 28,217 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.074 | sex, age, recruitment method, and PC1-20 | — |
| PPM002622 | PGS000892 (GLGC_2021_EUR_LDL_PRS_weights_PRS-CS) |
PSS001165| European Ancestry| 389,158 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.182 | sex, batch, age at initial assessment, PCs1-4 | — |
| PPM002623 | PGS000893 (GLGC_2021_EUR_LDL_PRS_weights_PT) |
PSS001165| European Ancestry| 389,158 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.176 | sex, batch, age at initial assessment, PCs1-4 | — |
| PPM002624 | PGS000888 (GLGC_2021_ALL_LDL_PRS_weights_PRS-CS) |
PSS001162| Multi-ancestry (including European)| 461,918 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.175 | sex, batch, age at initial assessment, PCs1-4 | — |
| PPM002625 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001162| Multi-ancestry (including European)| 461,918 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.182 | sex, batch, age at initial assessment, PCs1-4 | — |
| PPM002626 | PGS000890 (GLGC_2021_EAS_LDL_PRS_weights_PRS-CS) |
PSS001164| East Asian Ancestry| 1,441 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.113 | sex, batch, age at initial assessment, PCs1-4 | — |
| PPM002627 | PGS000891 (GLGC_2021_EAS_LDL_PRS_weights_PT) |
PSS001164| East Asian Ancestry| 1,441 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.1 | sex, batch, age at initial assessment, PCs1-4 | — |
| PPM002628 | PGS000886 (GLGC_2021_AFR_LDL_PRS_weights_PRS-CS) |
PSS001163| African Ancestry| 6,863 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.112 | sex, batch, age at initial assessment, PCs1-4 | — |
| PPM002629 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001163| African Ancestry| 6,863 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.175 | sex, batch, age at initial assessment, PCs1-4 | — |
| PPM002630 | PGS000896 (GLGC_2021_SAS_LDL_PRS_weights_PRS-CS) |
PSS001166| South Asian Ancestry| 6,814 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.04 | sex, batch, age at initial assessment, PCs1-4 | — |
| PPM002631 | PGS000897 (GLGC_2021_SAS_LDL_PRS_weights_PT) |
PSS001166| South Asian Ancestry| 6,814 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.058 | sex, batch, age at initial assessment, PCs1-4 | — |
| PPM002632 | PGS000894 (GLGC_2021_HIS_LDL_PRS_weights_PRS-CS) |
PSS001155| Hispanic or Latin American Ancestry| 360 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.023 | sex, batch, PC1-4, and birth year | — |
| PPM002633 | PGS000895 (GLGC_2021_HIS_LDL_PRS_weights_PT) |
PSS001155| Hispanic or Latin American Ancestry| 360 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.088 | sex, batch, PC1-4, and birth year | — |
| PPM002543 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001144| African Ancestry| 4,273 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.118 | age, sex, PC1-3 | — |
| PPM002544 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001145| African Ancestry| 707 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.101 | age, sex, PC1-3 | — |
| PPM002554 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001148| African Ancestry| 1,745 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.085 | age, sex, PC1-6 | — |
| PPM002564 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001151| South Asian Ancestry| 15,242 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Max LDL cholesterol | — | — | R²: 0.105 | age, sex, and PC1-10 | — |
| PPM002572 | PGS000893 (GLGC_2021_EUR_LDL_PRS_weights_PT) |
PSS001152| East Asian Ancestry| 118,260 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.071 | age, sex, and recruitment area | — |
| PPM002577 | PGS000886 (GLGC_2021_AFR_LDL_PRS_weights_PRS-CS) |
PSS001154| European Ancestry| 17,190 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.056 | sex, batch, PC1-4, and birth year | — |
| PPM002586 | PGS000887 (GLGC_2021_AFR_LDL_PRS_weights_PT) |
PSS001158| European Ancestry| 68,381 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.103 | sex, PC1-4, birth year, and mean age | — |
| PPM002597 | PGS000890 (GLGC_2021_EAS_LDL_PRS_weights_PRS-CS) |
PSS001157| Additional Asian Ancestries| 4,155 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.09 | sex, PC1-4, birth year, and mean age | — |
| PPM002608 | PGS000895 (GLGC_2021_HIS_LDL_PRS_weights_PT) |
PSS001156| African Ancestry| 18,251 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Mean LDL cholesterol | — | — | R²: 0.1 | sex, PC1-4, birth year, and mean age | — |
| PPM002619 | PGS000889 (GLGC_2021_ALL_LDL_PRS_weights_PT) |
PSS001161| East Asian Ancestry| 28,217 individuals |
PGP000230 | Graham SE et al. Nature (2021) |
Reported Trait: Baseline LDL cholesterol | — | — | R²: 0.098 | sex, age, recruitment method, and PC1-20 | — |
|
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
|---|---|---|---|---|---|---|---|---|
| PSS001144 | — | — | 4,273 individuals | — | African unspecified | — | AADM | — |
| PSS001145 | — | — | 707 individuals | — | African unspecified | — | AADM | — |
| PSS001146 | — | — | 3,566 individuals | — | African unspecified | — | AADM | — |
| PSS001147 | — | — | 10,460 individuals | — | African unspecified | — | AWI-Gen | — |
| PSS001148 | — | — | 1,745 individuals | — | African unspecified | — | AWI-Gen | — |
| PSS001149 | — | — | 4,972 individuals | — | Sub-Saharan African | — | AWI-Gen | — |
| PSS001150 | — | — | 3,743 individuals | — | African unspecified | — | AWI-Gen | — |
| PSS001151 | — | — | 15,242 individuals | — | South Asian | — | G&H | — |
| PSS001152 | — | — | 118,260 individuals | — | East Asian | — | KoGES | — |
| PSS001153 | — | — | 1,341 individuals | — | African American or Afro-Caribbean | — | MGI | — |
| PSS001154 | — | — | 17,190 individuals | — | European | — | MGI | — |
| PSS001155 | — | — | 360 individuals | — | Hispanic or Latin American | — | MGI | — |
| PSS001156 | — | — | 18,251 individuals | — | African American or Afro-Caribbean | — | MVP | Subset not used in discovery dataset |
| PSS001157 | — | — | 4,155 individuals | — | Asian unspecified | — | MVP | Subset not used in discovery dataset |
| PSS001158 | — | — | 68,381 individuals | — | European | — | MVP | Subset not used in discovery dataset |
| PSS001159 | — | — | 7,669 individuals | — | Hispanic or Latin American | — | MVP | Subset not used in discovery dataset |
| PSS001160 | — | — | 2,138 individuals | — | African American or Afro-Caribbean | — | PMB | — |
| PSS001161 | — | — | 28,217 individuals | — | East Asian | — | ToMMo | Only participants from Miyagi Prefecture were included |
| PSS001162 | — | — | 461,918 individuals | — | European, African unspecified, East Asian, South Asian | — | UKB | — |
| PSS001163 | — | — | 6,863 individuals | — | African unspecified | — | UKB | — |
| PSS001164 | — | — | 1,441 individuals | — | East Asian | — | UKB | — |
| PSS001165 | — | — | 389,158 individuals | — | European | — | UKB | — |
| PSS001166 | — | — | 6,814 individuals | — | South Asian | — | UKB | — |