Polygenic Score (PGS) ID: PGS002138

Predicted Trait
Reported Trait Forced vital capacity (FVC), Best measure
Mapped Trait(s) vital capacity (EFO_0004312)
Additional Trait Information physical measures
Released in PGS Catalog: Jan. 10, 2022
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Score Details

Score Construction
PGS Name portability-ldpred2_FVC
Development Method
Name LDpred2 (bigsnpr)
Parameters LDpred2-auto using HapMap3 variants
Variants
Original Genome Build GRCh37
Number of Variants 940,300
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000263
Citation (link to publication) Privé F et al. Am J Hum Genet (2022)
Ancestry Distribution
Score Development/Training
European: 100%
391,124 individuals (100%)
PGS Evaluation
European: 75%
Greater Middle Eastern: 25%
4 Sample Sets

Development Samples

Score Development/Training
Study Identifiers Sample Numbers Sample Ancestry Cohort(s) Phenotype Definitions & Methods Age of Study Participants Participant Follow-up Time Additional Ancestry Description Additional Sample/Cohort Information
— 391,124 individuals European UKB — — — UK (+ Ireland) —

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM011955 PSS009370|
European Ancestry|
15,118 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Forced vital capacity (FVC), Best measure — — Partial Correlation (partial-r): 0.3604 [0.3464, 0.3742] sex, age, birth date, deprivation index, 16 PCs —
PPM011956 PSS009144|
European Ancestry|
2,907 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Forced vital capacity (FVC), Best measure — — Partial Correlation (partial-r): 0.3369 [0.3042, 0.3689] sex, age, birth date, deprivation index, 16 PCs —
PPM011957 PSS008698|
European Ancestry|
4,520 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Forced vital capacity (FVC), Best measure — — Partial Correlation (partial-r): 0.3329 [0.3066, 0.3586] sex, age, birth date, deprivation index, 16 PCs —
PPM011958 PSS008472|
Greater Middle Eastern Ancestry|
163 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Forced vital capacity (FVC), Best measure — — Partial Correlation (partial-r): 0.3085 [0.1521, 0.4499] sex, age, birth date, deprivation index, 16 PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008698 — — 4,520 individuals — European Italy (South Europe) UKB —
PSS009144 — — 2,907 individuals — European Poland (NE Europe) UKB —
PSS009370 — — 15,118 individuals — European UK (+ Ireland) UKB —
PSS008472 — — 163 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —