| Predicted Trait | |
| Reported Trait | Systolic blood pressure |
| Mapped Trait(s) | systolic blood pressure (EFO_0006335) |
| Score Construction | |
| PGS Name | bp_SYSTOLICadjMEDz.BOLT-LMM |
| Development Method | |
| Name | BOLT-LMM |
| Parameters | NR |
| Variants | |
| Original Genome Build | GRCh37 |
| Number of Variants | 1,109,311 |
| Effect Weight Type | beta |
| PGS Source | |
| PGS Catalog Publication (PGP) ID | PGP000332 |
| Citation (link to publication) | Weissbrod O et al. Nat Genet (2022) |
| Ancestry Distribution | |
| Source of Variant Associations (GWAS) | European: 100% 310,831 individuals (100%) |
| PGS Evaluation | African: 25% East Asian: 25% European: 25% South Asian: 25% 4 Sample Sets |
Study Identifiers
|
Sample Numbers
|
Sample Ancestry
|
Cohort(s)
|
|---|---|---|---|
| — | 310,831 individuals | European | UKB |
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source
|
Trait
|
PGS Effect Sizes (per SD change) |
Classification Metrics
|
Other Metrics
|
Covariates Included in the Model
|
PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|
| PPM013114 | PSS009839| African Ancestry| 6,128 individuals | PGP000332 | Weissbrod O et al. Nat Genet (2022) | Reported Trait: Systolic Blood Pressure | — | — | Incremental R2 (full model vs. covariates alone): 0.0236 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013163 | PSS009840| East Asian Ancestry| 859 individuals | PGP000332 | Weissbrod O et al. Nat Genet (2022) | Reported Trait: Systolic Blood Pressure | — | — | Incremental R2 (full model vs. covariates alone): 0.07 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013212 | PSS009841| European Ancestry| 40,059 individuals | PGP000332 | Weissbrod O et al. Nat Genet (2022) | Reported Trait: Systolic Blood Pressure | — | — | Incremental R2 (full model vs. covariates alone): 0.106 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013261 | PSS009842| South Asian Ancestry| 7,573 individuals | PGP000332 | Weissbrod O et al. Nat Genet (2022) | Reported Trait: Systolic Blood Pressure | — | — | Incremental R2 (full model vs. covariates alone): 0.0691 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods
|
Participant Follow-up Time
|
Sample Numbers
|
Age of Study Participants
|
Sample Ancestry
|
Additional Ancestry Description
|
Cohort(s)
|
Additional Sample/Cohort Information
|
|---|---|---|---|---|---|---|---|---|
| PSS009839 | — | — | 6,128 individuals | — | African unspecified | — | UKB | — |
| PSS009840 | — | — | 859 individuals | — | East Asian | — | UKB | — |
| PSS009841 | — | — | 40,059 individuals | — | European | Non-British European | UKB | — |
| PSS009842 | — | — | 7,573 individuals | — | South Asian | — | UKB | — |