Polygenic Score (PGS) ID: PGS005012

Predicted Trait
Reported Trait Systolic blood pressure
Mapped Trait(s) systolic blood pressure (EFO_0006335)
Released in PGS Catalog: Oct. 8, 2024
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Score Details

Score Construction
PGS Name mean_Systolic_INT_ldpred_METAss_amrld
Development Method
Name ldpred
Parameters NR
Variants
Original Genome Build GRCh37
Number of Variants 1,286,612
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000679
Citation (link to publication) Gunn S et al. HGG Adv (2024)
Ancestry Distribution
Source of Variant
Associations (GWAS)
Multi-ancestry (including European): 50.3%
  • European
  • African
  • Hispanic or Latin American
  • Additional Asian Ancestries
European: 35.7%
African: 9.8%
Hispanic or Latin American: 4.1%
1,210,038 individuals (100%)
PGS Evaluation
African: 33.3%
Hispanic or Latin American: 33.3%
European: 33.3%
3 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
119,154 individuals African American or Afro-Caribbean MVP
432,510 individuals European MVP
49,572 individuals Hispanic or Latin American MVP
608,802 individuals European, African American or Afro-Caribbean, Hispanic or Latin American, Asian unspecified MVP

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM022149 PSS011824|
European Ancestry|
45,505 individuals
PGP000679 |
Gunn S et al. HGG Adv (2024)
Reported Trait: Systolic blood pressure β: 0.184 [0.18, 0.19] : 0.039 score previously adjusted for age, sex, 20 PCs
PPM022161 PSS011814|
Hispanic or Latin American Ancestry|
13,129 individuals
PGP000679 |
Gunn S et al. HGG Adv (2024)
Reported Trait: Systolic blood pressure β: 0.185 [0.17, 0.2] : 0.043 score previously adjusted for age, sex, 20 PCs
PPM022155 PSS011804|
African Ancestry|
19,359 individuals
PGP000679 |
Gunn S et al. HGG Adv (2024)
Reported Trait: Systolic blood pressure β: 0.145 [0.13, 0.16] : 0.024 score previously adjusted for age, sex, 20 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS011804 19,359 individuals African American or Afro-Caribbean AllofUs
PSS011814 13,129 individuals Hispanic or Latin American AllofUs
PSS011824 45,505 individuals European AllofUs