Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0000217 |
Description | Inflammation of the stomach. [NCIT: C26780] |
Trait category |
Digestive system disorder
|
Synonyms |
36 synonyms
|
Mapped terms |
19 mapped terms
|
Polygenic Score ID & Name
|
PGS Publication ID (PGP)
|
Reported Trait
|
Mapped Trait(s) (Ontology)
|
Number of Variants
|
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link)
|
---|---|---|---|---|---|---|
PGS004470 (disease.K29.score) | PGP000561 | Jung H et al. Commun Biol (2024) | K29 (Gastritis and duodenitis) | gastritis | 1,059,939 | - | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004470/ScoringFiles/PGS004470.txt.gz |
PGS004540 (meta.K29.score) | PGP000561 | Jung H et al. Commun Biol (2024) | K29 (Gastritis and duodenitis) | gastritis | 1,059,939 | - | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004540/ScoringFiles/PGS004540.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score
|
PGS Sample Set ID (PSS) |
Performance Source
|
Trait
|
PGS Effect Sizes (per SD change) |
Classification Metrics
|
Other Metrics
|
Covariates Included in the Model
|
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM020585 | PGS004470 (disease.K29.score) | PSS011364| European Ancestry| 56,192 individuals | PGP000561 | Jung H et al. Commun Biol (2024) | Reported Trait: K29 (Gastritis and duodenitis) | OR: 1.14876 | — | — | — | — |
PPM020655 | PGS004540 (meta.K29.score) | PSS011364| European Ancestry| 56,192 individuals | PGP000561 | Jung H et al. Commun Biol (2024) | Reported Trait: K29 (Gastritis and duodenitis) | OR: 1.22886 | — | — | — | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods
|
Participant Follow-up Time
|
Sample Numbers
|
Age of Study Participants
|
Sample Ancestry
|
Additional Ancestry Description
|
Cohort(s)
|
Additional Sample/Cohort Information
|
---|---|---|---|---|---|---|---|---|
PSS011364 | — | — | 56,192 individuals | — | European | — | UKB | — |