Trait: sunburn

Experimental Factor Ontology (EFO) Information
Identifier EFO_0003958
Description An inflammatory reaction from ultraviolet radiation characterized by transient redness, tenderness and occasional blistering. [NCIT: P378]
Trait category
Other disease
Synonyms 2 synonyms
  • Sunburns
  • sunburn
Mapped terms 12 mapped terms
  • ICD10:L55
  • ICD10CM:L55
  • ICD9:692.71
  • MEDGEN:1789170
  • MESH:D013471
  • MONDO:0005326
  • MeSH:D013471
  • MedDRA:10042496
  • NCIt:C3395
  • SCTID:403194002
  • UMLS:C2136733
  • icd11.foundation:318744822

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001257
(GBE_INI1737)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Childhood sunburn sunburn 519
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001257/ScoringFiles/PGS001257.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM008790 PGS001257
(GBE_INI1737)
 PSS004876|
African Ancestry|
5,650 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Childhood sunburn — — R²: 9e-05 [-0.00037, 0.00054]
Incremental R2 (full-covars): -0.00203
PGS R2 (no covariates): 0.0 [-0.00007, 0.00008]		 age, sex, UKB array type, Genotype PCs —
PPM008791 PGS001257
(GBE_INI1737)
 PSS004877|
East Asian Ancestry|
1,297 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Childhood sunburn — — R²: 0.01343 [0.0026, 0.02427]
Incremental R2 (full-covars): 0.00126
PGS R2 (no covariates): 0.00125 [-0.0021, 0.0046]		 age, sex, UKB array type, Genotype PCs —
PPM008792 PGS001257
(GBE_INI1737)
 PSS004878|
European Ancestry|
19,358 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Childhood sunburn — — R²: 0.03588 [0.03135, 0.04042]
Incremental R2 (full-covars): 0.01262
PGS R2 (no covariates): 0.01397 [0.01107, 0.01686]		 age, sex, UKB array type, Genotype PCs —
PPM008793 PGS001257
(GBE_INI1737)
 PSS004879|
South Asian Ancestry|
6,219 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Childhood sunburn — — R²: 0.00339 [0.00082, 0.00595]
Incremental R2 (full-covars): -0.00105
PGS R2 (no covariates): 0.00105 [-0.00038, 0.00249]		 age, sex, UKB array type, Genotype PCs —
PPM008794 PGS001257
(GBE_INI1737)
 PSS004880|
European Ancestry|
50,754 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Childhood sunburn — — R²: 0.00954 [0.00808, 0.011]
Incremental R2 (full-covars): 0.00533
PGS R2 (no covariates): 0.00558 [0.00446, 0.0067]		 age, sex, UKB array type, Genotype PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS004876 — — 5,650 individuals — African unspecified — UKB —
PSS004877 — — 1,297 individuals — East Asian — UKB —
PSS004878 — — 19,358 individuals — European non-white British ancestry UKB —
PSS004879 — — 6,219 individuals — South Asian — UKB —
PSS004880 — — 50,754 individuals — European white British ancestry UKB Testing cohort (heldout set)