Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0004314 |
Description | Measure of the maximum amount of air that can be expelled in a given number of seconds during a FORCED VITAL CAPACITY determination . It is usually given as FEV followed by a subscript indicating the number of seconds over which the measurement is made, although it is sometimes given as a percentage of forced vital capacity. | Trait category |
Other measurement
|
Synonyms |
3 synonyms
|
Mapped terms |
3 mapped terms
|
Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants |
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS001236 (GBE_INI3063) |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Lung function (FEV1) | forced expiratory volume | 17,732 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001236/ScoringFiles/PGS001236.txt.gz |
PGS001800 (PRS_FEV1) |
PGP000264 | Moll M et al. Lancet Respir Med (2020) |
Forced expiratory volume (FEV1) | forced expiratory volume | 1,713,430 | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001800/ScoringFiles/PGS001800.txt.gz | |
PGS001918 (portability-PLR_FEV1) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Forced expiratory volume in 1-second (FEV1), Best measure | forced expiratory volume | 79,136 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001918/ScoringFiles/PGS001918.txt.gz |
PGS002134 (portability-ldpred2_FEV1) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Forced expiratory volume in 1-second (FEV1), Best measure | forced expiratory volume | 940,003 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002134/ScoringFiles/PGS002134.txt.gz |
PGS004433 (X3063.score) |
PGP000561 | Jung H et al. Commun Biol (2024) |
Forced expiratory volume in 1-second (FEV1) | forced expiratory volume | 1,059,939 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004433/ScoringFiles/PGS004433.txt.gz |
PGS004435 (X20150.score) |
PGP000561 | Jung H et al. Commun Biol (2024) |
Forced expiratory volume in 1-second (FEV1), Best measure | forced expiratory volume | 1,059,939 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004435/ScoringFiles/PGS004435.txt.gz |
PGS004437 (X20153.score) |
PGP000561 | Jung H et al. Commun Biol (2024) |
Forced expiratory volume in 1-second (FEV1), predicted | forced expiratory volume | 1,059,939 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004437/ScoringFiles/PGS004437.txt.gz |
PGS004438 (X20154.score) |
PGP000561 | Jung H et al. Commun Biol (2024) |
Forced expiratory volume in 1-second (FEV1), predicted percentage | forced expiratory volume | 1,059,939 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004438/ScoringFiles/PGS004438.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM008689 | PGS001236 (GBE_INI3063) |
PSS007091| African Ancestry| 5,865 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: FEV1 | — | — | R²: 0.37563 [0.35703, 0.39423] Incremental R2 (full-covars): -0.00395 PGS R2 (no covariates): 0.00371 [0.00076, 0.00666] |
age, sex, UKB array type, Genotype PCs | — |
PPM008690 | PGS001236 (GBE_INI3063) |
PSS007092| East Asian Ancestry| 1,590 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: FEV1 | — | — | R²: 0.48044 [0.44632, 0.51457] Incremental R2 (full-covars): 0.01654 PGS R2 (no covariates): 0.03258 [0.01603, 0.04912] |
age, sex, UKB array type, Genotype PCs | — |
PPM008691 | PGS001236 (GBE_INI3063) |
PSS007093| European Ancestry| 22,831 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: FEV1 | — | — | R²: 0.5167 [0.50807, 0.52533] Incremental R2 (full-covars): 0.0401 PGS R2 (no covariates): 0.04225 [0.03736, 0.04714] |
age, sex, UKB array type, Genotype PCs | — |
PPM008692 | PGS001236 (GBE_INI3063) |
PSS007094| South Asian Ancestry| 7,147 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: FEV1 | — | — | R²: 0.46546 [0.44931, 0.4816] Incremental R2 (full-covars): 0.01517 PGS R2 (no covariates): 0.0239 [0.01722, 0.03059] |
age, sex, UKB array type, Genotype PCs | — |
PPM008693 | PGS001236 (GBE_INI3063) |
PSS007095| European Ancestry| 62,090 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: FEV1 | — | — | R²: 0.51484 [0.50958, 0.52009] Incremental R2 (full-covars): 0.04356 PGS R2 (no covariates): 0.04413 [0.0411, 0.04716] |
age, sex, UKB array type, Genotype PCs | — |
PPM009319 | PGS001800 (PRS_FEV1) |
PSS007723| Multi-ancestry (excluding European)| 7,122 individuals |
PGP000264 | Moll M et al. Lancet Respir Med (2020) |
Reported Trait: Chronic obstructive pulmonary disease (moderate-to-severe) | — | — | Odds Ratio of Combined PRS (OR): 1.42 [1.34, 1.51) | Age, sex, height, smoking pack-years, PCs of genetic ancestry, study clinic, PRS_Ratio | NOTE: A combined PRS is used to account for both PRS. The combined score can be derived using code from: http://www.copdconsortium.org/polygenic-risk-score |
PPM009316 | PGS001800 (PRS_FEV1) |
PSS007721| European Ancestry| 5,175 individuals |
PGP000264 | Moll M et al. Lancet Respir Med (2020) |
Reported Trait: GOLD spirometry grades | — | — | Association (p-value): 4.54e-43 | — | — |
PPM009318 | PGS001800 (PRS_FEV1) |
PSS007722| European Ancestry| 19,229 individuals |
PGP000264 | Moll M et al. Lancet Respir Med (2020) |
Reported Trait: Chronic obstructive pulmonary disease (moderate-to-severe) | — | — | Odds Ratio of Combined PRS (OR): 1.81 [1.74, 1.88] | Age, sex, height, smoking pack-years, PCs of genetic ancestry, study clinic, PRS_Ratio | NOTE: A combined PRS is used to account for both PRS. The combined score can be derived using code from: http://www.copdconsortium.org/polygenic-risk-score |
PPM015563 | PGS001800 (PRS_FEV1) |
PSS009985| European Ancestry| 6,647 individuals |
PGP000385 | Zhang J et al. Eur Respir J (2022) |Ext. |
Reported Trait: Incident chronic obstructive pulmonary disease before age 50 years | OR: 1.55 [1.41, 1.71] | AUROC: 0.739 [0.718, 0.761] | — | PGS001801, early-life risk factors, principal components of genetic ancestry | NOTE: A combined PRS is used to account for both PRS. The combined score can be derived using code from: http://www.copdconsortium.org/polygenic-risk-scor |
PPM015564 | PGS001800 (PRS_FEV1) |
PSS009983| African Ancestry| 2,464 individuals |
PGP000385 | Zhang J et al. Eur Respir J (2022) |Ext. |
Reported Trait: Incident chronic obstructive pulmonary disease before age 50 years | OR: 1.23 [1.05, 1.43] | AUROC: 0.635 [0.595, 0.675] | — | PGS001801, early-life risk factors, principal components of genetic ancestry | NOTE: A combined PRS is used to account for both PRS. The combined score can be derived using code from: http://www.copdconsortium.org/polygenic-risk-scor |
PPM015565 | PGS001800 (PRS_FEV1) |
PSS009984| European Ancestry| 6,812 individuals |
PGP000385 | Zhang J et al. Eur Respir J (2022) |Ext. |
Reported Trait: Incident chronic obstructive pulmonary disease before age 50 years | OR: 2.47 [2.12, 2.88] | — | — | PGS001801, early-life risk factors, principal components of genetic ancestry | NOTE: A combined PRS is used to account for both PRS. The combined score can be derived using code from: http://www.copdconsortium.org/polygenic-risk-scor |
PPM010228 | PGS001918 (portability-PLR_FEV1) |
PSS009143| European Ancestry| 2,907 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Forced expiratory volume in 1-second (FEV1), Best measure | — | — | Partial Correlation (partial-r): 0.2917 [0.2579, 0.3247] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM010229 | PGS001918 (portability-PLR_FEV1) |
PSS008697| European Ancestry| 4,520 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Forced expiratory volume in 1-second (FEV1), Best measure | — | — | Partial Correlation (partial-r): 0.2873 [0.2603, 0.3139] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM010230 | PGS001918 (portability-PLR_FEV1) |
PSS008471| Greater Middle Eastern Ancestry| 163 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Forced expiratory volume in 1-second (FEV1), Best measure | — | — | Partial Correlation (partial-r): 0.3457 [0.1925, 0.4825] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM010227 | PGS001918 (portability-PLR_FEV1) |
PSS009369| European Ancestry| 15,118 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Forced expiratory volume in 1-second (FEV1), Best measure | — | — | Partial Correlation (partial-r): 0.3319 [0.3176, 0.346] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011927 | PGS002134 (portability-ldpred2_FEV1) |
PSS009369| European Ancestry| 15,118 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Forced expiratory volume in 1-second (FEV1), Best measure | — | — | Partial Correlation (partial-r): 0.328 [0.3137, 0.3422] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011928 | PGS002134 (portability-ldpred2_FEV1) |
PSS009143| European Ancestry| 2,907 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Forced expiratory volume in 1-second (FEV1), Best measure | — | — | Partial Correlation (partial-r): 0.2917 [0.258, 0.3247] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011929 | PGS002134 (portability-ldpred2_FEV1) |
PSS008697| European Ancestry| 4,520 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Forced expiratory volume in 1-second (FEV1), Best measure | — | — | Partial Correlation (partial-r): 0.2929 [0.266, 0.3194] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011930 | PGS002134 (portability-ldpred2_FEV1) |
PSS008471| Greater Middle Eastern Ancestry| 163 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Forced expiratory volume in 1-second (FEV1), Best measure | — | — | Partial Correlation (partial-r): 0.3187 [0.1631, 0.4588] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM020548 | PGS004433 (X3063.score) |
PSS011364| European Ancestry| 56,192 individuals |
PGP000561 | Jung H et al. Commun Biol (2024) |
Reported Trait: Forced expiratory volume in 1-second (FEV1) | — | — | PGS R2 (no covariates): 0.1804 | — | — |
PPM020550 | PGS004435 (X20150.score) |
PSS011364| European Ancestry| 56,192 individuals |
PGP000561 | Jung H et al. Commun Biol (2024) |
Reported Trait: Forced expiratory volume in 1-second (FEV1), Best measure | — | — | PGS R2 (no covariates): 0.17694 | — | — |
PPM020552 | PGS004437 (X20153.score) |
PSS011364| European Ancestry| 56,192 individuals |
PGP000561 | Jung H et al. Commun Biol (2024) |
Reported Trait: Forced expiratory volume in 1-second (FEV1), predicted | — | — | PGS R2 (no covariates): 0.16138 | — | — |
PPM020553 | PGS004438 (X20154.score) |
PSS011364| European Ancestry| 56,192 individuals |
PGP000561 | Jung H et al. Commun Biol (2024) |
Reported Trait: Forced expiratory volume in 1-second (FEV1), predicted percentage | — | — | PGS R2 (no covariates): 0.22965 | — | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS011364 | — | — | 56,192 individuals | — | European | — | UKB | — |
PSS008697 | — | — | 4,520 individuals | — | European | Italy (South Europe) | UKB | — |
PSS008471 | — | — | 163 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iran (Middle East) | UKB | — |
PSS009369 | — | — | 15,118 individuals | — | European | UK (+ Ireland) | UKB | — |
PSS007721 | — | — | 5,175 individuals, 52.27 % Male samples |
— | European | — | COPDGene | — |
PSS007722 | — | — | [ ,
52.27 % Male samples |
— | European | — | COPDGene | Fixed-effects meta-analysis |
PSS007722 | — | — | [ ,
36.19 % Male samples |
— | European | — | CHS | Fixed-effects meta-analysis |
PSS007722 | — | — | [ ,
66.34 % Male samples |
— | European | — | ECLIPSE | Fixed-effects meta-analysis |
PSS007722 | — | — | [ ,
63.74 % Male samples |
— | European | — | LHS | Fixed-effects meta-analysis |
PSS007722 | — | — | [ ,
47.66 % Male samples |
— | European | — | MESA | Fixed-effects meta-analysis |
PSS007722 | — | — | [ ,
83.12 % Male samples |
— | European | — | NAS, NETT | Fixed-effects meta-analysis |
PSS007722 | — | — | [ ,
42.87 % Male samples |
— | European | — | RS | Fixed-effects meta-analysis |
PSS007722 | — | — | [ ,
46.73 % Male samples |
— | European | — | RS | Fixed-effects meta-analysis |
PSS007722 | — | — | [ ,
43.36 % Male samples |
— | European | — | RS | Fixed-effects meta-analysis |
PSS007722 | — | — | [ ,
52.85 % Male samples |
— | European | — | SPIROMICS | Fixed-effects meta-analysis |
PSS007723 | — | — | [ ,
57.62 % Male samples |
— | African American or Afro-Caribbean | — | COPDGene | Fixed-effects meta-analysis |
PSS007723 | — | — | [ ,
34.49 % Male samples |
— | African American or Afro-Caribbean | — | CHS | Fixed-effects meta-analysis |
PSS007723 | — | — | [ ,
74.56 % Male samples |
— | Not reported | — | NR | Fixed-effects meta-analysis |
PSS007723 | — | — | [ ,
46.58 % Male samples |
— | African American or Afro-Caribbean | — | MESA | Fixed-effects meta-analysis |
PSS007723 | — | — | [ ,
49.89 % Male samples |
— | East Asian | — | MESA | Fixed-effects meta-analysis |
PSS007723 | — | — | [ ,
47.26 % Male samples |
— | Hispanic or Latin American | — | MESA | Fixed-effects meta-analysis |
PSS009985 | Age of diagnosis was defined using age at earliest exam when moderate-to-severe COPD (modified Global Initiative for Chronic Obstructive Lung Disease (GOLD) grade 2–4 using pre-bronchodilator spirometry) was observed. We defined COPD occurring early in life as age at diagnosis <50 year | — | 6,647 individuals, 52.3 % Male samples |
— | European (Non-Hispanic White) |
— | COPDGene | — |
PSS009983 | Age of diagnosis was defined using age at earliest exam when moderate-to-severe COPD (modified Global Initiative for Chronic Obstructive Lung Disease (GOLD) grade 2–4 using pre-bronchodilator spirometry) was observed. We defined COPD occurring early in life as age at diagnosis <50 year | — | 2,464 individuals, 57.6 % Male samples |
— | African American or Afro-Caribbean (African American) |
— | COPDGene | — |
PSS009984 | Age of diagnosis was defined using age at earliest exam when moderate-to-severe COPD (modified Global Initiative for Chronic Obstructive Lung Disease (GOLD) grade 2–4 using pre-bronchodilator spirometry) was observed. We defined COPD occurring early in life as age at diagnosis <50 year | — | 6,812 individuals | — | European | — | FHS | — |
PSS009143 | — | — | 2,907 individuals | — | European | Poland (NE Europe) | UKB | — |
PSS007091 | — | — | 5,865 individuals | — | African unspecified | — | UKB | — |
PSS007092 | — | — | 1,590 individuals | — | East Asian | — | UKB | — |
PSS007093 | — | — | 22,831 individuals | — | European | non-white British ancestry | UKB | — |
PSS007094 | — | — | 7,147 individuals | — | South Asian | — | UKB | — |
PSS007095 | — | — | 62,090 individuals | — | European | white British ancestry | UKB | Testing cohort (heldout set) |