Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0005115 |
Description | a quantification of metabolic rate | Trait category |
Other measurement
|
Child trait(s) | base metabolic rate measurement |
Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants |
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS001108 (GBE_INI23105) |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Basal metabolic rate | base metabolic rate measurement | 32,154 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001108/ScoringFiles/PGS001108.txt.gz |
PGS003903 (INI23105) |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Basal metabolic rate | base metabolic rate measurement | 46,752 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003903/ScoringFiles/PGS003903.txt.gz |
PGS004379 (X23105.score) |
PGP000561 | Jung H et al. Commun Biol (2024) |
Basal metabolic rate | metabolic rate measurement | 1,059,939 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004379/ScoringFiles/PGS004379.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM008279 | PGS001108 (GBE_INI23105) |
PSS005056| African Ancestry| 6,305 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Basal metabolic rate | — | — | R²: 0.48988 [0.47253, 0.50723] Incremental R2 (full-covars): 0.0123 PGS R2 (no covariates): 0.02112 [0.01421, 0.02804] |
age, sex, UKB array type, Genotype PCs | — |
PPM008280 | PGS001108 (GBE_INI23105) |
PSS005057| East Asian Ancestry| 1,680 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Basal metabolic rate | — | — | R²: 0.69641 [0.6724, 0.72042] Incremental R2 (full-covars): 0.00563 PGS R2 (no covariates): 0.02063 [0.0073, 0.03395] |
age, sex, UKB array type, Genotype PCs | — |
PPM008281 | PGS001108 (GBE_INI23105) |
PSS005058| European Ancestry| 24,466 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Basal metabolic rate | — | — | R²: 0.68913 [0.68272, 0.69554] Incremental R2 (full-covars): 0.0528 PGS R2 (no covariates): 0.05431 [0.04883, 0.05978] |
age, sex, UKB array type, Genotype PCs | — |
PPM008282 | PGS001108 (GBE_INI23105) |
PSS005059| South Asian Ancestry| 7,649 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Basal metabolic rate | — | — | R²: 0.6137 [0.60031, 0.6271] Incremental R2 (full-covars): 0.04025 PGS R2 (no covariates): 0.03213 [0.02445, 0.03981] |
age, sex, UKB array type, Genotype PCs | — |
PPM008283 | PGS001108 (GBE_INI23105) |
PSS005060| European Ancestry| 66,261 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Basal metabolic rate | — | — | R²: 0.68963 [0.68574, 0.69352] Incremental R2 (full-covars): 0.06041 PGS R2 (no covariates): 0.05937 [0.05591, 0.06283] |
age, sex, UKB array type, Genotype PCs | — |
PPM018834 | PGS003903 (INI23105) |
PSS011150| European Ancestry| 66,614 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Basal metabolic rate | — | — | R²: 0.69265 [0.6888, 0.6965] PGS R2 (no covariates): 0.06299 [0.05945, 0.06653] Incremental R2 (full-covars): 0.06291 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
PPM018835 | PGS003903 (INI23105) |
PSS011105| European Ancestry| 2,837 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Basal metabolic rate | — | — | R²: 0.69082 [0.67211, 0.70952] PGS R2 (no covariates): 0.07645 [0.05787, 0.09503] Incremental R2 (full-covars): 0.06748 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
PPM018836 | PGS003903 (INI23105) |
PSS011118| South Asian Ancestry| 1,457 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Basal metabolic rate | — | — | R²: 0.61405 [0.58337, 0.64472] PGS R2 (no covariates): 0.0388 [0.0196, 0.058] Incremental R2 (full-covars): 0.05332 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
PPM018837 | PGS003903 (INI23105) |
PSS011158| African Ancestry| 1,169 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Basal metabolic rate | — | — | R²: 0.47014 [0.42937, 0.51091] PGS R2 (no covariates): 0.00888 [-0.0016, 0.01937] Incremental R2 (full-covars): 0.00406 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
PPM018838 | PGS003903 (INI23105) |
PSS011177| Multi-ancestry (excluding European)| 7,841 individuals |
PGP000502 | Tanigawa Y et al. AJHG (2023) |
Reported Trait: Basal metabolic rate | — | — | R²: 0.682 [0.67051, 0.6935] PGS R2 (no covariates): 0.05111 [0.04171, 0.0605] Incremental R2 (full-covars): 0.04633 |
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) | — |
PPM020494 | PGS004379 (X23105.score) |
PSS011364| European Ancestry| 56,192 individuals |
PGP000561 | Jung H et al. Commun Biol (2024) |
Reported Trait: Basal metabolic rate | — | — | PGS R2 (no covariates): 0.2229 | — | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS005056 | — | — | 6,305 individuals | — | African unspecified | — | UKB | — |
PSS005057 | — | — | 1,680 individuals | — | East Asian | — | UKB | — |
PSS005058 | — | — | 24,466 individuals | — | European | non-white British ancestry | UKB | — |
PSS005059 | — | — | 7,649 individuals | — | South Asian | — | UKB | — |
PSS005060 | — | — | 66,261 individuals | — | European | white British ancestry | UKB | Testing cohort (heldout set) |
PSS011177 | — | — | 7,841 individuals | — | East Asian, Other admixed ancestry | East Asian, Other admixed ancestry | UKB | — |
PSS011150 | — | — | 66,614 individuals | — | European (white British ancestry) |
— | UKB | — |
PSS011118 | — | — | 1,457 individuals | — | South Asian | — | UKB | — |
PSS011158 | — | — | 1,169 individuals | — | African unspecified | — | UKB | — |
PSS011364 | — | — | 56,192 individuals | — | European | — | UKB | — |
PSS011105 | — | — | 2,837 individuals | — | European (non-white British ancestry) |
— | UKB | — |