Trait: GFR change measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0006829
Description A quantification of the variation in an individual's glomerular filtration rate (GFR) over a period of time used in assessment of kidney function and diagnosis of kidney disease.
Trait category
Other measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Ancestry legend
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Multi-ancestry (excluding European)
African
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Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000664
(GRS7_GFR)
 PGP000124 |
Gorski M et al. Kidney Int (2020)
 Rapid decline of glomerular filtration rate (GFR) GFR change measurement 7
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000664/ScoringFiles/PGS000664.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM016131 PGS000664
(GRS7_GFR)
 PSS010042|
European Ancestry|
1,601 individuals
 PGP000396 |
Koraishy FM et al. BMC Nephrol (2022)
|Ext.		 Reported Trait: Baseline eGFR β: -1.0 [-1.59, -0.41] — — Age, gender, education, the first ten genetic principal components, exposure severity —
PPM001371 PGS000664
(GRS7_GFR)
 PSS000600|
European Ancestry|
11,440 individuals
 PGP000124 |
Gorski M et al. Kidney Int (2020)
 Reported Trait: Rapid decline of glomerular filtration rate estimated from creatinine (CKDi25) — — Odds Ratio (OR, high vs. low risk): 1.29 [1.06, 1.57] Age, sex and baseline eGFRcrea —
PPM001372 PGS000664
(GRS7_GFR)
 PSS000599|
European Ancestry|
3,447 individuals
 PGP000124 |
Gorski M et al. Kidney Int (2020)
 Reported Trait: Acute kidney injury — — Odds Ratio (OR, high vs. low risk): 1.2 [1.08, 1.33] Matching variables (age-group and sex), quantitative age —
PPM016132 PGS000664
(GRS7_GFR)
 PSS010042|
European Ancestry|
1,601 individuals
 PGP000396 |
Koraishy FM et al. BMC Nephrol (2022)
|Ext.		 Reported Trait: Chronic kidney disease stage OR: 1.18 [1.05, 1.32] — — Age, gender, education, the first ten genetic principal components, exposure severity —
PPM016133 PGS000664
(GRS7_GFR)
 PSS010042|
European Ancestry|
1,601 individuals
 PGP000396 |
Koraishy FM et al. BMC Nephrol (2022)
|Ext.		 Reported Trait: eGFR Decline (<= -1.00 ml/min/1.73m2/year) OR: 1.14 [1.01, 1.28] — — Age, gender, education, the first ten genetic principal components, exposure severity —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000600 CKDi25 cases defined as >25% eGFRcrea decline during follow-up together with a movement from eGFRcrea≥60 mL/min/1.73m^2 at baseline to eGFR<60 mL/min/1.73m^2 at follow up compared to CKDi25 controls defined as eGFRcrea≥60 mL/min/1.73m^2. High risk groups had 8-14 adverse alleles. Low risk groups had 0-5 adverse alleles. —
[
  • 448 cases
  • , 10,992 controls
]
 — European — DIACORE, KORA, UKB 87.61% overlap between the CKDi25 GWAS cohort and this dataset.
PSS010042 — — 1,601 individuals,
93.0 % Male samples
 Mean = 54.12 years European — NR WTC
PSS000599 Cases: ICD 10 code N17. Controls: no ICD10 code N17, frequency-matched by age-group and sex —
[
  • 1,013 cases
  • , 2,434 controls
]
 — European — UKB Possible overlap between GWAS cohorts and this dataset.