Trait: uterine corpus cancer

Experimental Factor Ontology (EFO) Information
Identifier EFO_0007532
Description A malignant neoplasm involving the body of uterus. [MONDO: DesignPattern]
Trait category
Cancer
Synonyms 10 synonyms
  • body of uterus cancer
  • cancer of body of uterus
  • cancer of the corpus uteri
  • corpus uteri cancer
  • endometrial cancer
  • endometrial cancer
  • malignant body of uterus neoplasm
  • malignant neoplasm of body of uterus
  • uterine (including endometrial) cancer
  • uterine corpus cancer
Mapped terms 11 mapped terms
  • COHD:4156113
  • DOID:9460
  • EFO:0007532
  • ICD10:C54
  • ICD10:C54.9
  • ICD9:182
  • MEDGEN:364875
  • MONDO:0006003
  • NCIT:C61574
  • SCTID:371972005
  • UMLS:C1883486

Associated Polygenic Score(s)

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Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003740
(PRS16_CU)
 PGP000470 |
Xin J et al. EBioMedicine (2023)
 Corpus Uteri uterine corpus cancer 16
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003740/ScoringFiles/PGS003740.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM018496 PGS003740
(PRS16_CU)
 PSS010989|
European Ancestry|
372 individuals
 PGP000470 |
Xin J et al. EBioMedicine (2023)
 Reported Trait: Corpus Uteri OR: 1.38 [1.2, 1.58] — — — —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS010989 — — 372 individuals Mean = 64.72 years European — TCGA —