Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0007704 |
Description | quantification of some aspect, eg frequency or severity, of depressive episodes in patients with men... tal or behavioural disorders such as bipolar disorder or clinical depressionShow more |
Trait category |
Other measurement
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Polygenic Score ID & Name
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PGS Publication ID (PGP)
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Reported Trait
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Mapped Trait(s) (Ontology)
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Number of Variants
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Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link)
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PGS002113 (portability-ldpred2_depression_stress_trauma) | PGP000263 | Privé F et al. Am J Hum Genet (2022) | Depression possibly related to stressful or traumatic event | depressive episode measurement, trauma exposure measurement | 545,334 | - | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002113/ScoringFiles/PGS002113.txt.gz |
PGS003497 (cont-decay-depressed_for_1w) | PGP000457 | Ding Y et al. bioRxiv (2022) |Pre | Ever depressed for a whole week | depressive episode measurement | 979,739 | - | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003497/ScoringFiles/PGS003497.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score
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PGS Sample Set ID (PSS) |
Performance Source
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Trait
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PGS Effect Sizes (per SD change) |
Classification Metrics
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Other Metrics
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Covariates Included in the Model
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PGS Performance: Other Relevant Information |
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PPM011759 | PGS002113 (portability-ldpred2_depression_stress_trauma) | PSS009396| European Ancestry| 3,597 individuals | PGP000263 | Privé F et al. Am J Hum Genet (2022) | Reported Trait: Depression possibly related to stressful or traumatic event | — | — | Partial Correlation (partial-r): 0.0378 [0.005, 0.0705] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011760 | PGS002113 (portability-ldpred2_depression_stress_trauma) | PSS009170| European Ancestry| 741 individuals | PGP000263 | Privé F et al. Am J Hum Genet (2022) | Reported Trait: Depression possibly related to stressful or traumatic event | — | — | Partial Correlation (partial-r): 0.0272 [-0.0459, 0.1001] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011761 | PGS002113 (portability-ldpred2_depression_stress_trauma) | PSS008724| European Ancestry| 1,364 individuals | PGP000263 | Privé F et al. Am J Hum Genet (2022) | Reported Trait: Depression possibly related to stressful or traumatic event | — | — | Partial Correlation (partial-r): 0.0391 [-0.0144, 0.0924] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011762 | PGS002113 (portability-ldpred2_depression_stress_trauma) | PSS008498| Greater Middle Eastern Ancestry| 100 individuals | PGP000263 | Privé F et al. Am J Hum Genet (2022) | Reported Trait: Depression possibly related to stressful or traumatic event | — | — | Partial Correlation (partial-r): -0.0739 [-0.2889, 0.1482] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011763 | PGS002113 (portability-ldpred2_depression_stress_trauma) | PSS008276| South Asian Ancestry| 425 individuals | PGP000263 | Privé F et al. Am J Hum Genet (2022) | Reported Trait: Depression possibly related to stressful or traumatic event | — | — | Partial Correlation (partial-r): 0.1438 [0.0471, 0.238] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011764 | PGS002113 (portability-ldpred2_depression_stress_trauma) | PSS008053| East Asian Ancestry| 215 individuals | PGP000263 | Privé F et al. Am J Hum Genet (2022) | Reported Trait: Depression possibly related to stressful or traumatic event | — | — | Partial Correlation (partial-r): 0.0141 [-0.1267, 0.1543] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011765 | PGS002113 (portability-ldpred2_depression_stress_trauma) | PSS007840| African Ancestry| 215 individuals | PGP000263 | Privé F et al. Am J Hum Genet (2022) | Reported Trait: Depression possibly related to stressful or traumatic event | — | — | Partial Correlation (partial-r): -0.0269 [-0.1668, 0.114] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011766 | PGS002113 (portability-ldpred2_depression_stress_trauma) | PSS008944| African Ancestry| 214 individuals | PGP000263 | Privé F et al. Am J Hum Genet (2022) | Reported Trait: Depression possibly related to stressful or traumatic event | — | — | Partial Correlation (partial-r): -0.0334 [-0.1734, 0.108] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM017425 | PGS003497 (cont-decay-depressed_for_1w) | PSS010936| European Ancestry| 6,610 individuals | PGP000457 | Ding Y et al. bioRxiv (2022) |Pre | Reported Trait: Ever depressed for a whole week | — | — | partial-R2: 0.01 | sex, age, deprivation index, PC1-16 | — |
PPM017509 | PGS003497 (cont-decay-depressed_for_1w) | PSS010852| European Ancestry| 1,520 individuals | PGP000457 | Ding Y et al. bioRxiv (2022) |Pre | Reported Trait: Ever depressed for a whole week | — | — | partial-R2: 0.01 | sex, age, deprivation index, PC1-16 | — |
PPM017593 | PGS003497 (cont-decay-depressed_for_1w) | PSS010684| European Ancestry| 2,449 individuals | PGP000457 | Ding Y et al. bioRxiv (2022) |Pre | Reported Trait: Ever depressed for a whole week | — | — | partial-R2: 0.01 | sex, age, deprivation index, PC1-16 | — |
PPM017677 | PGS003497 (cont-decay-depressed_for_1w) | PSS010600| Greater Middle Eastern Ancestry| 505 individuals | PGP000457 | Ding Y et al. bioRxiv (2022) |Pre | Reported Trait: Ever depressed for a whole week | — | — | partial-R2: 0.0 | sex, age, deprivation index, PC1-16 | — |
PPM017761 | PGS003497 (cont-decay-depressed_for_1w) | PSS010264| European Ancestry| 593 individuals | PGP000457 | Ding Y et al. bioRxiv (2022) |Pre | Reported Trait: Ever depressed for a whole week | — | — | partial-R2: 0.0 | sex, age, deprivation index, PC1-16 | — |
PPM017845 | PGS003497 (cont-decay-depressed_for_1w) | PSS010516| South Asian Ancestry| 3,525 individuals | PGP000457 | Ding Y et al. bioRxiv (2022) |Pre | Reported Trait: Ever depressed for a whole week | — | — | partial-R2: 0.0 | sex, age, deprivation index, PC1-16 | — |
PPM017929 | PGS003497 (cont-decay-depressed_for_1w) | PSS010432| East Asian Ancestry| 751 individuals | PGP000457 | Ding Y et al. bioRxiv (2022) |Pre | Reported Trait: Ever depressed for a whole week | — | — | partial-R2: 0.0 | sex, age, deprivation index, PC1-16 | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods
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Participant Follow-up Time
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Sample Numbers
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Age of Study Participants
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Sample Ancestry
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Additional Ancestry Description
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Cohort(s)
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Additional Sample/Cohort Information
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PSS007840 | — | — | 215 individuals | — | African American or Afro-Caribbean | Carribean | UKB | — |
PSS008053 | — | — | 215 individuals | — | East Asian | China (East Asia) | UKB | — |
PSS008276 | — | — | 425 individuals | — | South Asian | India (South Asia) | UKB | — |
PSS008498 | — | — | 100 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iran (Middle East) | UKB | — |
PSS008724 | — | — | 1,364 individuals | — | European | Italy (South Europe) | UKB | — |
PSS008944 | — | — | 214 individuals | — | African unspecified | Nigeria (West Africa) | UKB | — |
PSS009170 | — | — | 741 individuals | — | European | Poland (NE Europe) | UKB | — |
PSS009396 | — | — | 3,597 individuals | — | European | UK (+ Ireland) | UKB | — |
PSS010264 | — | — | 593 individuals, 43.0 % Male samples | Mean = 58.7 years Sd = 6.9 years | European | Ashkenazi | UKB | — |
PSS010348 | — | — | 1,457 individuals, 37.0 % Male samples | Mean = 52.6 years Sd = 7.9 years | African American or Afro-Caribbean | Caribbean | UKB | — |
PSS010432 | — | — | 751 individuals, 30.0 % Male samples | Mean = 53.5 years Sd = 8.1 years | East Asian | Chinese | UKB | — |
PSS010516 | — | — | 3,525 individuals, 53.0 % Male samples | Mean = 53.7 years Sd = 8.5 years | South Asian | Indian | UKB | — |
PSS010600 | — | — | 505 individuals, 55.0 % Male samples | Mean = 53.4 years Sd = 8.3 years | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iranian | UKB | — |
PSS010684 | — | — | 2,449 individuals, 43.0 % Male samples | Mean = 54.5 years Sd = 8.7 years | European | Italian | UKB | — |
PSS010768 | — | — | 2,067 individuals, 42.0 % Male samples | Mean = 52.2 years Sd = 8.0 years | African unspecified | Nigerian | UKB | — |