Trait: subiculum volume

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009399
Description Volume of subiculum region in hippocampus.
Trait category
Other measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003711
(L_subiculum_body_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left subiculum body volume subiculum volume 1,828
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003711/ScoringFiles/PGS003711.txt.gz
PGS003712
(L_subiculum_head_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left subiculum head volume subiculum volume 3,330
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003712/ScoringFiles/PGS003712.txt.gz
PGS003713
(R_subiculum_body_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum body volume subiculum volume 257
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003713/ScoringFiles/PGS003713.txt.gz
PGS003714
(R_subiculum_head_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum head volume subiculum volume 55,423
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003714/ScoringFiles/PGS003714.txt.gz
PGS003715
(L_subiculum_body_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left subiculum body volume subiculum volume 2,959
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003715/ScoringFiles/PGS003715.txt.gz
PGS003716
(L_subiculum_head_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left subiculum head volume subiculum volume 9,645
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003716/ScoringFiles/PGS003716.txt.gz
PGS003717
(R_subiculum_body_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum body volume subiculum volume 15
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003717/ScoringFiles/PGS003717.txt.gz
PGS003718
(R_subiculum_head_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum head volume subiculum volume 3,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003718/ScoringFiles/PGS003718.txt.gz
PGS003719
(L_subiculum_body_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left subiculum body volume subiculum volume 31,308
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003719/ScoringFiles/PGS003719.txt.gz
PGS003720
(L_subiculum_head_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left subiculum head volume subiculum volume 34,590
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003720/ScoringFiles/PGS003720.txt.gz
PGS003721
(R_subiculum_body_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum body volume subiculum volume 83,000
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003721/ScoringFiles/PGS003721.txt.gz
PGS003722
(R_subiculum_head_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right subiculum head volume subiculum volume 51,267
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003722/ScoringFiles/PGS003722.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM018288 PGS003711
(L_subiculum_body_trans_ancestry_meta_analysis)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left subiculum body volume — — R²: 0.01667 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018290 PGS003712
(L_subiculum_head_trans_ancestry_meta_analysis)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left subiculum head volume — — R²: 0.02185 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018309 PGS003713
(R_subiculum_body_trans_ancestry_meta_analysis)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right subiculum body volume — — R²: 0.01645 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018311 PGS003714
(R_subiculum_head_trans_ancestry_meta_analysis)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right subiculum head volume — — R²: 0.01323 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018332 PGS003715
(L_subiculum_body_UKBB_EUR_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left subiculum body volume — — R²: 0.01068 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018334 PGS003716
(L_subiculum_head_UKBB_EUR_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left subiculum head volume — — R²: 0.00362 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018353 PGS003717
(R_subiculum_body_UKBB_EUR_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right subiculum body volume — — R²: 0.01093 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018355 PGS003718
(R_subiculum_head_UKBB_EUR_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right subiculum head volume — — R²: 0.00561 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018376 PGS003719
(L_subiculum_body_CHIMGEN_EAS_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left subiculum body volume — — R²: 0.00439 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018378 PGS003720
(L_subiculum_head_CHIMGEN_EAS_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left subiculum head volume — — R²: 0.00354 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018397 PGS003721
(R_subiculum_body_CHIMGEN_EAS_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right subiculum body volume — — R²: 0.00781 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018399 PGS003722
(R_subiculum_head_CHIMGEN_EAS_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right subiculum head volume — — R²: 0.00661 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS010958 — — 1,999 individuals — East Asian — CHIMGEN —