Trait: parasubiculum volume

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009405
Description Volume of parasubiculum volume.
Trait category
Other measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003693
(L_parasubiculum_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left parasubiculum volume parasubiculum volume 31,017
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003693/ScoringFiles/PGS003693.txt.gz
PGS003694
(R_parasubiculum_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right parasubiculum volume parasubiculum volume 35,421
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003694/ScoringFiles/PGS003694.txt.gz
PGS003695
(L_parasubiculum_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left parasubiculum volume parasubiculum volume 2,838
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003695/ScoringFiles/PGS003695.txt.gz
PGS003696
(R_parasubiculum_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right parasubiculum volume parasubiculum volume 73,898
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003696/ScoringFiles/PGS003696.txt.gz
PGS003697
(L_parasubiculum_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left parasubiculum volume parasubiculum volume 115,746
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003697/ScoringFiles/PGS003697.txt.gz
PGS003698
(R_parasubiculum_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right parasubiculum volume parasubiculum volume 1,050
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003698/ScoringFiles/PGS003698.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM018295 PGS003693
(L_parasubiculum_trans_ancestry_meta_analysis)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left parasubiculum volume — — R²: 0.00699 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018316 PGS003694
(R_parasubiculum_trans_ancestry_meta_analysis)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right parasubiculum volume — — R²: 0.01334 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018339 PGS003695
(L_parasubiculum_UKBB_EUR_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left parasubiculum volume — — R²: 0.00295 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018360 PGS003696
(R_parasubiculum_UKBB_EUR_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right parasubiculum volume — — R²: 0.00438 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018383 PGS003697
(L_parasubiculum_CHIMGEN_EAS_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left parasubiculum volume — — R²: 0.0036 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018404 PGS003698
(R_parasubiculum_CHIMGEN_EAS_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right parasubiculum volume — — R²: 0.00084 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS010958 — — 1,999 individuals — East Asian — CHIMGEN —