Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0009718 |
Description |
|
Trait category |
Other measurement
|
Synonym | PEF |
Mapped terms |
2 mapped terms
|
Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants |
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS001009 (GBE_INI3064) |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
PEF | peak expiratory flow | 9,523 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001009/ScoringFiles/PGS001009.txt.gz |
PGS001010 (GBE_INI1003064) |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
PEF pred. ratio | peak expiratory flow | 15,135 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001010/ScoringFiles/PGS001010.txt.gz |
PGS004434 (X3064.score) |
PGP000561 | Jung H et al. Commun Biol (2024) |
Peak expiratory flow (PEF) | peak expiratory flow | 1,059,939 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004434/ScoringFiles/PGS004434.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM007808 | PGS001009 (GBE_INI3064) |
PSS007101| African Ancestry| 5,865 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: PEF | — | — | R²: 0.22035 [0.20256, 0.23814] Incremental R2 (full-covars): 0.00018 PGS R2 (no covariates): 0.00203 [-0.00015, 0.00422] |
age, sex, UKB array type, Genotype PCs | — |
PPM007809 | PGS001009 (GBE_INI3064) |
PSS007102| East Asian Ancestry| 1,590 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: PEF | — | — | R²: 0.30722 [0.27083, 0.34361] Incremental R2 (full-covars): -0.00018 PGS R2 (no covariates): 0.00498 [-0.00167, 0.01163] |
age, sex, UKB array type, Genotype PCs | — |
PPM007810 | PGS001009 (GBE_INI3064) |
PSS007103| European Ancestry| 22,831 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: PEF | — | — | Incremental R2 (full-covars): 0.01492 PGS R2 (no covariates): 0.01342 [0.01058, 0.01626] R²: 0.36549 [0.35597, 0.37502] |
age, sex, UKB array type, Genotype PCs | — |
PPM007811 | PGS001009 (GBE_INI3064) |
PSS007104| South Asian Ancestry| 7,147 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: PEF | — | — | R²: 0.28496 [0.26806, 0.30186] Incremental R2 (full-covars): 0.00596 PGS R2 (no covariates): 0.00838 [0.00436, 0.01239] |
age, sex, UKB array type, Genotype PCs | — |
PPM007812 | PGS001009 (GBE_INI3064) |
PSS007105| European Ancestry| 62,090 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: PEF | — | — | R²: 0.37763 [0.37186, 0.38341] Incremental R2 (full-covars): 0.01833 PGS R2 (no covariates): 0.01842 [0.01641, 0.02043] |
age, sex, UKB array type, Genotype PCs | — |
PPM007813 | PGS001010 (GBE_INI1003064) |
PSS004776| African Ancestry| 5,852 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: PEF pred. ratio | — | — | R²: 0.01124 [0.00614, 0.01633] Incremental R2 (full-covars): -0.0041 PGS R2 (no covariates): 0.00217 [-0.00009, 0.00443] |
age, sex, UKB array type, Genotype PCs | — |
PPM007814 | PGS001010 (GBE_INI1003064) |
PSS004777| East Asian Ancestry| 1,587 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: PEF pred. ratio | — | — | R²: 0.04374 [0.02479, 0.06269] Incremental R2 (full-covars): 0.02108 PGS R2 (no covariates): 0.02152 [0.00792, 0.03513] |
age, sex, UKB array type, Genotype PCs | — |
PPM007815 | PGS001010 (GBE_INI1003064) |
PSS004778| European Ancestry| 22,763 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: PEF pred. ratio | — | — | R²: 0.09646 [0.08949, 0.10343] Incremental R2 (full-covars): 0.04766 PGS R2 (no covariates): 0.05063 [0.04532, 0.05593] |
age, sex, UKB array type, Genotype PCs | — |
PPM007816 | PGS001010 (GBE_INI1003064) |
PSS004779| South Asian Ancestry| 7,136 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: PEF pred. ratio | — | — | R²: 0.04323 [0.03442, 0.05204] Incremental R2 (full-covars): 0.0161 PGS R2 (no covariates): 0.01839 [0.01249, 0.02428] |
age, sex, UKB array type, Genotype PCs | — |
PPM007817 | PGS001010 (GBE_INI1003064) |
PSS004780| European Ancestry| 61,887 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: PEF pred. ratio | — | — | R²: 0.11466 [0.11013, 0.11918] Incremental R2 (full-covars): 0.05769 PGS R2 (no covariates): 0.06034 [0.05685, 0.06382] |
age, sex, UKB array type, Genotype PCs | — |
PPM020549 | PGS004434 (X3064.score) |
PSS011364| European Ancestry| 56,192 individuals |
PGP000561 | Jung H et al. Commun Biol (2024) |
Reported Trait: Peak expiratory flow (PEF) | — | — | PGS R2 (no covariates): 0.12499 | — | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS007101 | — | — | 5,865 individuals | — | African unspecified | — | UKB | — |
PSS007102 | — | — | 1,590 individuals | — | East Asian | — | UKB | — |
PSS007103 | — | — | 22,831 individuals | — | European | non-white British ancestry | UKB | — |
PSS007104 | — | — | 7,147 individuals | — | South Asian | — | UKB | — |
PSS007105 | — | — | 62,090 individuals | — | European | white British ancestry | UKB | Testing cohort (heldout set) |
PSS004776 | — | — | 5,852 individuals | — | African unspecified | — | UKB | — |
PSS004777 | — | — | 1,587 individuals | — | East Asian | — | UKB | — |
PSS004778 | — | — | 22,763 individuals | — | European | non-white British ancestry | UKB | — |
PSS004779 | — | — | 7,136 individuals | — | South Asian | — | UKB | — |
PSS004780 | — | — | 61,887 individuals | — | European | white British ancestry | UKB | Testing cohort (heldout set) |
PSS011364 | — | — | 56,192 individuals | — | European | — | UKB | — |