Trait: friendship satisfaction measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009725
Description Quantification of friendship satisfaction.
Trait category
Other measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001398
(GBE_QT_FC1004570)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Friendship satisfaction friendship satisfaction measurement 659
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001398/ScoringFiles/PGS001398.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007255 PGS001398
(GBE_QT_FC1004570)
 PSS007606|
African Ancestry|
3,707 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Friendships satisfaction — — R²: 0.00439 [0.00119, 0.0076]
Incremental R2 (full-covars): -0.00158
PGS R2 (no covariates): 0.00016 [-0.00046, 0.00079]		 age, sex, UKB array type, Genotype PCs —
PPM007256 PGS001398
(GBE_QT_FC1004570)
 PSS007607|
East Asian Ancestry|
782 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Friendships satisfaction — — R²: 0.01093 [0.00113, 0.02073]
Incremental R2 (full-covars): -0.00284
PGS R2 (no covariates): 0.00036 [-0.00143, 0.00214]		 age, sex, UKB array type, Genotype PCs —
PPM007257 PGS001398
(GBE_QT_FC1004570)
 PSS007608|
European Ancestry|
10,751 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Friendships satisfaction — — R²: 0.01912 [0.01575, 0.02249]
Incremental R2 (full-covars): -0.00089
PGS R2 (no covariates): 0.00011 [-0.00015, 0.00038]		 age, sex, UKB array type, Genotype PCs —
PPM007258 PGS001398
(GBE_QT_FC1004570)
 PSS007609|
South Asian Ancestry|
4,922 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Friendships satisfaction — — R²: 0.00983 [0.00548, 0.01418]
Incremental R2 (full-covars): -0.00092
PGS R2 (no covariates): 9e-05 [-0.00033, 0.00052]		 age, sex, UKB array type, Genotype PCs —
PPM007259 PGS001398
(GBE_QT_FC1004570)
 PSS007610|
European Ancestry|
26,257 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Friendships satisfaction — — R²: 0.01886 [0.01682, 0.02089]
Incremental R2 (full-covars): 0.00139
PGS R2 (no covariates): 0.00143 [0.00086, 0.002]		 age, sex, UKB array type, Genotype PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007606 — — 3,707 individuals — African unspecified — UKB —
PSS007607 — — 782 individuals — East Asian — UKB —
PSS007608 — — 10,751 individuals — European non-white British ancestry UKB —
PSS007609 — — 4,922 individuals — South Asian — UKB —
PSS007610 — — 26,257 individuals — European white British ancestry UKB Testing cohort (heldout set)