Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0009801 |
Description | Number of non-cancer illness occurrences in an individual, as reported by the individual. |
Trait category |
Other trait
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Polygenic Score ID & Name
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PGS Publication ID (PGP)
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Reported Trait
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Mapped Trait(s) (Ontology)
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Number of Variants
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Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link)
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PGS001004 (GBE_INI135) | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Number of non-cancer illnesses | number of non-cancer illnesses, self-reported | 5,212 | - | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001004/ScoringFiles/PGS001004.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score
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PGS Sample Set ID (PSS) |
Performance Source
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Trait
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PGS Effect Sizes (per SD change) |
Classification Metrics
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Other Metrics
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Covariates Included in the Model
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PGS Performance: Other Relevant Information |
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PPM007783 | PGS001004 (GBE_INI135) | PSS004831| African Ancestry| 6,483 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: # of self-reported non-cancer illnesses | — | — | R²: 0.09535 [0.08177, 0.10893] Incremental R2 (full-covars): -0.00187 PGS R2 (no covariates): 0.00097 [-0.00054, 0.00248] | age, sex, UKB array type, Genotype PCs | — |
PPM007784 | PGS001004 (GBE_INI135) | PSS004832| East Asian Ancestry| 1,702 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: # of self-reported non-cancer illnesses | — | — | R²: 0.07817 [0.05374, 0.10259] Incremental R2 (full-covars): -0.00278 PGS R2 (no covariates): 0.0019 [-0.00222, 0.00603] | age, sex, UKB array type, Genotype PCs | — |
PPM007785 | PGS001004 (GBE_INI135) | PSS004833| European Ancestry| 24,894 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: # of self-reported non-cancer illnesses | — | — | R²: 0.06738 [0.06137, 0.0734] Incremental R2 (full-covars): 0.0094 PGS R2 (no covariates): 0.00928 [0.00691, 0.01165] | age, sex, UKB array type, Genotype PCs | — |
PPM007786 | PGS001004 (GBE_INI135) | PSS004834| South Asian Ancestry| 7,812 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: # of self-reported non-cancer illnesses | — | — | R²: 0.10855 [0.09555, 0.12155] Incremental R2 (full-covars): 0.00434 PGS R2 (no covariates): 0.00427 [0.00139, 0.00715] | age, sex, UKB array type, Genotype PCs | — |
PPM007787 | PGS001004 (GBE_INI135) | PSS004835| European Ancestry| 67,419 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: # of self-reported non-cancer illnesses | — | — | R²: 0.06288 [0.05934, 0.06643] Incremental R2 (full-covars): 0.01064 PGS R2 (no covariates): 0.01063 [0.00909, 0.01217] | age, sex, UKB array type, Genotype PCs | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods
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Participant Follow-up Time
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Sample Numbers
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Age of Study Participants
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Sample Ancestry
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Additional Ancestry Description
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Cohort(s)
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Additional Sample/Cohort Information
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PSS004831 | — | — | 6,483 individuals | — | African unspecified | — | UKB | — |
PSS004832 | — | — | 1,702 individuals | — | East Asian | — | UKB | — |
PSS004833 | — | — | 24,894 individuals | — | European | non-white British ancestry | UKB | — |
PSS004834 | — | — | 7,812 individuals | — | South Asian | — | UKB | — |
PSS004835 | — | — | 67,419 individuals | — | European | white British ancestry | UKB | Testing cohort (heldout set) |