Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0009803 |
Description | Number of treatments undergone by an individual (including medications taken), as reported by the in... dividual.Show more |
Trait category |
Other trait
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Polygenic Score ID & Name
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PGS Publication ID (PGP)
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Reported Trait
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Mapped Trait(s) (Ontology)
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Number of Variants
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Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link)
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PGS001003 (GBE_INI137) | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Number of medications taken | number of treatments or medications taken, self-reported | 8,085 | - | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001003/ScoringFiles/PGS001003.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score
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PGS Sample Set ID (PSS) |
Performance Source
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Trait
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PGS Effect Sizes (per SD change) |
Classification Metrics
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Other Metrics
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Covariates Included in the Model
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PGS Performance: Other Relevant Information |
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PPM007778 | PGS001003 (GBE_INI137) | PSS004836| African Ancestry| 6,483 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: # of medications taken | — | — | R²: 0.10873 [0.09444, 0.12301] Incremental R2 (full-covars): -0.00564 PGS R2 (no covariates): 0.00035 [-0.00056, 0.00126] | age, sex, UKB array type, Genotype PCs | — |
PPM007779 | PGS001003 (GBE_INI137) | PSS004837| East Asian Ancestry| 1,702 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: # of medications taken | — | — | R²: 0.10438 [0.07695, 0.1318] Incremental R2 (full-covars): -0.01455 PGS R2 (no covariates): 3e-05 [-0.00047, 0.00053] | age, sex, UKB array type, Genotype PCs | — |
PPM007780 | PGS001003 (GBE_INI137) | PSS004838| European Ancestry| 24,894 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: # of medications taken | — | — | R²: 0.09752 [0.09052, 0.10452] Incremental R2 (full-covars): 0.01417 PGS R2 (no covariates): 0.01416 [0.01125, 0.01708] | age, sex, UKB array type, Genotype PCs | — |
PPM007781 | PGS001003 (GBE_INI137) | PSS004839| South Asian Ancestry| 7,812 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: # of medications taken | — | — | R²: 0.13684 [0.1227, 0.15098] Incremental R2 (full-covars): 0.00757 PGS R2 (no covariates): 0.00724 [0.0035, 0.01098] | age, sex, UKB array type, Genotype PCs | — |
PPM007782 | PGS001003 (GBE_INI137) | PSS004840| European Ancestry| 67,419 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: # of medications taken | — | — | R²: 0.08553 [0.0815, 0.08957] Incremental R2 (full-covars): 0.01548 PGS R2 (no covariates): 0.01558 [0.01372, 0.01743] | age, sex, UKB array type, Genotype PCs | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods
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Participant Follow-up Time
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Sample Numbers
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Age of Study Participants
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Sample Ancestry
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Additional Ancestry Description
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Cohort(s)
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Additional Sample/Cohort Information
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PSS004836 | — | — | 6,483 individuals | — | African unspecified | — | UKB | — |
PSS004837 | — | — | 1,702 individuals | — | East Asian | — | UKB | — |
PSS004838 | — | — | 24,894 individuals | — | European | non-white British ancestry | UKB | — |
PSS004839 | — | — | 7,812 individuals | — | South Asian | — | UKB | — |
PSS004840 | — | — | 67,419 individuals | — | European | white British ancestry | UKB | Testing cohort (heldout set) |