Trait: ease of getting up in the morning, self-reported

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009817
Description Ease of getting up in the morning, as reported by an individual.
Trait category
Other trait

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
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Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001001
(GBE_QT_FC1001170)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Getting up in morning ease of getting up in the morning, self-reported 7,743
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001001/ScoringFiles/PGS001001.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007768 PGS001001
(GBE_QT_FC1001170)
 PSS007521|
African Ancestry|
6,380 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Getting up in morning — — R²: 0.02759 [0.01974, 0.03544]
Incremental R2 (full-covars): -0.00068
PGS R2 (no covariates): 0.0016 [-0.00034, 0.00354]		 age, sex, UKB array type, Genotype PCs —
PPM007769 PGS001001
(GBE_QT_FC1001170)
 PSS007522|
East Asian Ancestry|
1,654 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Getting up in morning — — R²: 0.05654 [0.03528, 0.0778]
Incremental R2 (full-covars): 0.01249
PGS R2 (no covariates): 0.00998 [0.00061, 0.01936]		 age, sex, UKB array type, Genotype PCs —
PPM007770 PGS001001
(GBE_QT_FC1001170)
 PSS007523|
European Ancestry|
24,834 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Getting up in morning — — R²: 0.06844 [0.06239, 0.0745]
Incremental R2 (full-covars): 0.01035
PGS R2 (no covariates): 0.01095 [0.00838, 0.01352]		 age, sex, UKB array type, Genotype PCs —
PPM007771 PGS001001
(GBE_QT_FC1001170)
 PSS007524|
South Asian Ancestry|
7,605 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Getting up in morning — — Incremental R2 (full-covars): -0.00065
R²: 0.02641 [0.0194, 0.03341]
PGS R2 (no covariates): 0.00176 [-0.0001, 0.00361]		 age, sex, UKB array type, Genotype PCs —
PPM007772 PGS001001
(GBE_QT_FC1001170)
 PSS007525|
European Ancestry|
67,358 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Getting up in morning — — R²: 0.06645 [0.06282, 0.07008]
Incremental R2 (full-covars): 0.01088
PGS R2 (no covariates): 0.0111 [0.00953, 0.01267]		 age, sex, UKB array type, Genotype PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007521 — — 6,380 individuals — African unspecified — UKB —
PSS007522 — — 1,654 individuals — East Asian — UKB —
PSS007523 — — 24,834 individuals — European non-white British ancestry UKB —
PSS007524 — — 7,605 individuals — South Asian — UKB —
PSS007525 — — 67,358 individuals — European white British ancestry UKB Testing cohort (heldout set)