Trait: nap during day, self-reported

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009818
Description Having a nap during the day, as reported by an individual.
Trait category
Other trait
Mapped term NCIt:C118602

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001000
(GBE_QT_FC1001190)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Nap during day nap during day, self-reported 10,264
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001000/ScoringFiles/PGS001000.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007763 PGS001000
(GBE_QT_FC1001190)
 PSS007531|
African Ancestry|
6,354 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Nap during day — — R²: 0.02805 [0.02013, 0.03596]
Incremental R2 (full-covars): -0.0026
PGS R2 (no covariates): 0.0015 [-0.00038, 0.00338]		 age, sex, UKB array type, Genotype PCs —
PPM007764 PGS001000
(GBE_QT_FC1001190)
 PSS007532|
East Asian Ancestry|
1,639 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Nap during day — — R²: 0.04314 [0.02431, 0.06197]
Incremental R2 (full-covars): 0.00779
PGS R2 (no covariates): 0.00945 [0.00032, 0.01858]		 age, sex, UKB array type, Genotype PCs —
PPM007765 PGS001000
(GBE_QT_FC1001190)
 PSS007533|
European Ancestry|
24,845 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Nap during day — — R²: 0.05039 [0.0451, 0.05569]
Incremental R2 (full-covars): 0.01434
PGS R2 (no covariates): 0.01525 [0.01223, 0.01827]		 age, sex, UKB array type, Genotype PCs —
PPM007766 PGS001000
(GBE_QT_FC1001190)
 PSS007534|
South Asian Ancestry|
7,429 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Nap during day — — R²: 0.03321 [0.02541, 0.04101]
Incremental R2 (full-covars): 0.0042
PGS R2 (no covariates): 0.00671 [0.0031, 0.01031]		 age, sex, UKB array type, Genotype PCs —
PPM007767 PGS001000
(GBE_QT_FC1001190)
 PSS007535|
European Ancestry|
67,398 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Nap during day — — R²: 0.06089 [0.05739, 0.06439]
Incremental R2 (full-covars): 0.01718
PGS R2 (no covariates): 0.01737 [0.01541, 0.01932]		 age, sex, UKB array type, Genotype PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007531 — — 6,354 individuals — African unspecified — UKB —
PSS007532 — — 1,639 individuals — East Asian — UKB —
PSS007533 — — 24,845 individuals — European non-white British ancestry UKB —
PSS007534 — — 7,429 individuals — South Asian — UKB —
PSS007535 — — 67,398 individuals — European white British ancestry UKB Testing cohort (heldout set)