Trait: fish consumption measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0010139
Description Quantification of some fish consumption or fish consumption-related behaviour, usually self-reported via a questionnaire.
Trait category
Other measurement
Synonym fish intake measurement
Mapped term PMID:31320941

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000993
(GBE_QT_FC1001329)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Oily fish consumption fish consumption measurement 3,925
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000993/ScoringFiles/PGS000993.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007729 PGS000993
(GBE_QT_FC1001329)
 PSS007542|
East Asian Ancestry|
1,634 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Oily fish intake — — R²: 0.05306 [0.03239, 0.07373]
Incremental R2 (full-covars): 0.00082
PGS R2 (no covariates): 3e-05 [-0.00047, 0.00052]		 age, sex, UKB array type, Genotype PCs —
PPM007730 PGS000993
(GBE_QT_FC1001329)
 PSS007543|
European Ancestry|
24,750 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Oily fish intake — — R²: 0.03679 [0.0322, 0.04138]
Incremental R2 (full-covars): 0.00646
PGS R2 (no covariates): 0.00879 [0.00648, 0.01109]		 age, sex, UKB array type, Genotype PCs —
PPM007728 PGS000993
(GBE_QT_FC1001329)
 PSS007541|
African Ancestry|
6,245 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Oily fish intake — — R²: 0.05225 [0.04172, 0.06278]
Incremental R2 (full-covars): -0.00048
PGS R2 (no covariates): 0.00017 [-0.00046, 0.0008]		 age, sex, UKB array type, Genotype PCs —
PPM007731 PGS000993
(GBE_QT_FC1001329)
 PSS007544|
South Asian Ancestry|
7,440 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Oily fish intake — — R²: 0.14805 [0.13354, 0.16257]
Incremental R2 (full-covars): 0.00182
PGS R2 (no covariates): 0.00137 [-0.00027, 0.003]		 age, sex, UKB array type, Genotype PCs —
PPM007732 PGS000993
(GBE_QT_FC1001329)
 PSS007545|
European Ancestry|
67,150 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Oily fish intake — — R²: 0.04059 [0.03767, 0.0435]
Incremental R2 (full-covars): 0.00809
PGS R2 (no covariates): 0.00832 [0.00695, 0.00968]		 age, sex, UKB array type, Genotype PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007541 — — 6,245 individuals — African unspecified — UKB —
PSS007542 — — 1,634 individuals — East Asian — UKB —
PSS007543 — — 24,750 individuals — European non-white British ancestry UKB —
PSS007544 — — 7,440 individuals — South Asian — UKB —
PSS007545 — — 67,150 individuals — European white British ancestry UKB Testing cohort (heldout set)