Trait: urea measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0011005
Description Quantification of urea in a sample.
Trait category
Other measurement
Mapped term PMID:33283231

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
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Polygenic Score ID & Name
PGS Publication ID (PGP)
Reported Trait
Mapped Trait(s) (Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File (FTP Link)
PGS001980
(portability-PLR_log_urea)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Ureaurea measurement56,782
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001980/ScoringFiles/PGS001980.txt.gz
PGS002198
(portability-ldpred2_log_urea)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Ureaurea measurement820,118
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002198/ScoringFiles/PGS002198.txt.gz
PGS003553
(cont-decay-log_urea)
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		Ureaurea measurement979,739
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003553/ScoringFiles/PGS003553.txt.gz
PGS004331
(X30670.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Urea (mmol/L)urea measurement1,059,939
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004331/ScoringFiles/PGS004331.txt.gz
PGS004739
(BUN_PRSmix_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Ureaurea measurement587,237
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004739/ScoringFiles/PGS004739.txt.gz
PGS004740
(BUN_PRSmix_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Ureaurea measurement1,499,858
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004740/ScoringFiles/PGS004740.txt.gz
PGS004741
(BUN_PRSmixPlus_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Ureaurea measurement1,178,386
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004741/ScoringFiles/PGS004741.txt.gz
PGS004742
(BUN_PRSmixPlus_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Ureaurea measurement1,499,858
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004742/ScoringFiles/PGS004742.txt.gz
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Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

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PGS Performance
Metric ID (PPM)
Evaluated Score
PGS Sample Set ID
(PSS)
Performance Source
Trait
PGS Effect Sizes
(per SD change)
Classification Metrics
Other Metrics
Covariates Included in the Model
PGS Performance:
Other Relevant Information
PPM010715PGS001980
(portability-PLR_log_urea)
PSS009468|
European Ancestry|
18,989 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.2537 [0.2404, 0.267]sex, age, birth date, deprivation index, 16 PCs—
PPM010716PGS001980
(portability-PLR_log_urea)
PSS009242|
European Ancestry|
3,950 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.2562 [0.2268, 0.2852]sex, age, birth date, deprivation index, 16 PCs—
PPM010717PGS001980
(portability-PLR_log_urea)
PSS008796|
European Ancestry|
6,320 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.2435 [0.2201, 0.2665]sex, age, birth date, deprivation index, 16 PCs—
PPM010718PGS001980
(portability-PLR_log_urea)
PSS008570|
Greater Middle Eastern Ancestry|
1,124 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.2276 [0.1709, 0.2828]sex, age, birth date, deprivation index, 16 PCs—
PPM010719PGS001980
(portability-PLR_log_urea)
PSS008348|
South Asian Ancestry|
6,003 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.2101 [0.1858, 0.2342]sex, age, birth date, deprivation index, 16 PCs—
PPM010720PGS001980
(portability-PLR_log_urea)
PSS008125|
East Asian Ancestry|
1,715 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.1944 [0.1481, 0.2398]sex, age, birth date, deprivation index, 16 PCs—
PPM010721PGS001980
(portability-PLR_log_urea)
PSS007912|
African Ancestry|
2,345 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.16 [0.1202, 0.1994]sex, age, birth date, deprivation index, 16 PCs—
PPM010722PGS001980
(portability-PLR_log_urea)
PSS009016|
African Ancestry|
3,655 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.0842 [0.0518, 0.1164]sex, age, birth date, deprivation index, 16 PCs—
PPM012431PGS002198
(portability-ldpred2_log_urea)
PSS009468|
European Ancestry|
18,989 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.2506 [0.2372, 0.2639]sex, age, birth date, deprivation index, 16 PCs—
PPM012432PGS002198
(portability-ldpred2_log_urea)
PSS009242|
European Ancestry|
3,950 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.2538 [0.2243, 0.2828]sex, age, birth date, deprivation index, 16 PCs—
PPM012433PGS002198
(portability-ldpred2_log_urea)
PSS008796|
European Ancestry|
6,320 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.2434 [0.2201, 0.2665]sex, age, birth date, deprivation index, 16 PCs—
PPM012434PGS002198
(portability-ldpred2_log_urea)
PSS008570|
Greater Middle Eastern Ancestry|
1,124 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.229 [0.1723, 0.2842]sex, age, birth date, deprivation index, 16 PCs—
PPM012435PGS002198
(portability-ldpred2_log_urea)
PSS008348|
South Asian Ancestry|
6,003 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.2054 [0.181, 0.2296]sex, age, birth date, deprivation index, 16 PCs—
PPM012436PGS002198
(portability-ldpred2_log_urea)
PSS008125|
East Asian Ancestry|
1,715 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.1944 [0.1482, 0.2398]sex, age, birth date, deprivation index, 16 PCs—
PPM012437PGS002198
(portability-ldpred2_log_urea)
PSS007912|
African Ancestry|
2,345 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Urea——Partial Correlation (partial-r): 0.1588 [0.1189, 0.1982]sex, age, birth date, deprivation index, 16 PCs—
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Evaluated Samples

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PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods
Participant Follow-up Time
Sample Numbers
Age of Study Participants
Sample Ancestry
Additional Ancestry Description
Cohort(s)
Additional Sample/Cohort Information
PSS007912——2,345 individuals—African American or Afro-CaribbeanCarribeanUKB—
PSS008125——1,715 individuals—East AsianChina (East Asia)UKB—
PSS008348——6,003 individuals—South AsianIndia (South Asia)UKB—
PSS008570——1,124 individuals—Greater Middle Eastern (Middle Eastern, North African or Persian)Iran (Middle East)UKB—
PSS008796——6,320 individuals—EuropeanItaly (South Europe)UKB—
PSS009016——3,655 individuals—African unspecifiedNigeria (West Africa)UKB—
PSS009242——3,950 individuals—EuropeanPoland (NE Europe)UKB—
PSS009468——18,989 individuals—EuropeanUK (+ Ireland)UKB—
PSS010247——2,235 individuals,
45.0 % Male samples
Mean = 58.1 years
Sd = 7.1 years		EuropeanAshkenaziUKB—
PSS010331——2,333 individuals,
37.0 % Male samples
Mean = 52.5 years
Sd = 8.1 years		African American or Afro-CaribbeanCaribbeanUKB—
PSS010415——1,704 individuals,
33.0 % Male samples
Mean = 52.4 years
Sd = 7.8 years		East AsianChineseUKB—
PSS010499——5,949 individuals,
54.0 % Male samples
Mean = 53.3 years
Sd = 8.4 years		South AsianIndianUKB—
PSS010583——1,095 individuals,
60.0 % Male samples
Mean = 51.9 years
Sd = 8.0 years		Greater Middle Eastern (Middle Eastern, North African or Persian)IranianUKB—
PSS010667——6,168 individuals,
45.0 % Male samples
Mean = 54.5 years
Sd = 8.4 years		EuropeanItalianUKB—
PSS010751——3,626 individuals,
46.0 % Male samples
Mean = 51.9 years
Sd = 8.1 years		African unspecifiedNigerianUKB—
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