Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0020865 |
Description | Measurement of some parts of the aorta, including ascending aorta distensibility and area. | Trait category |
Cardiovascular measurement
|
Synonym | aortic diagnostic technique |
Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants |
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS002236 (PRS_AsAoD) |
PGP000268 | Tcheandjieu C et al. Nat Genet (2022) |
Ascending aorta diameter (MRI-derived) | aortic measurement | 92,299 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002236/ScoringFiles/PGS002236.txt.gz |
PGS002267 (PRS89_AA) |
PGP000296 | Pirruccello JP et al. Nat Genet (2021) |
Ascending thoracic aortic diameter | cardiovascular disease biomarker measurement, aortic measurement |
89 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002267/ScoringFiles/PGS002267.txt.gz |
PGS004927 (score_resint_max_aa_shortaxis_cm) |
PGP000663 | Pirruccello JP et al. Eur Heart J (2024) |
Ascending aortic diameter | aortic measurement | 1,111,632 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004927/ScoringFiles/PGS004927.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM012713 | PGS002236 (PRS_AsAoD) |
PSS009501| European Ancestry| 11,573 individuals |
PGP000268 | Tcheandjieu C et al. Nat Genet (2022) |
Reported Trait: Ascending aortic diameter in males | β: 0.69 | — | — | age, sex, BSA, top five principal components | beta unit is mm |
PPM012716 | PGS002236 (PRS_AsAoD) |
PSS009503| European Ancestry| 523,178 individuals |
PGP000268 | Tcheandjieu C et al. Nat Genet (2022) |
Reported Trait: Prevalent thoracic aortic aneurysm | OR: 1.37 [1.31, 1.43] | — | — | — | — |
PPM012717 | PGS002236 (PRS_AsAoD) |
PSS009504| Hispanic or Latin American Ancestry| 32,336 individuals |
PGP000268 | Tcheandjieu C et al. Nat Genet (2022) |
Reported Trait: Prevalent thoracic aortic aneurysm | OR: 1.4 [1.16, 1.69] | — | — | — | — |
PPM012712 | PGS002236 (PRS_AsAoD) |
PSS009501| European Ancestry| 11,573 individuals |
PGP000268 | Tcheandjieu C et al. Nat Genet (2022) |
Reported Trait: Ascending aortic diameter | β: 0.64 | — | — | age, sex, BSA, top five principal components | beta unit is mm |
PPM012715 | PGS002236 (PRS_AsAoD) |
PSS009505| European Ancestry| 314,560 individuals |
PGP000268 | Tcheandjieu C et al. Nat Genet (2022) |
Reported Trait: Prevalent thoracic aortic aneurysm | OR: 1.5 | — | — | body surface area (BSA), sex, top 10 principal components | beta unit is mm |
PPM012721 | PGS002236 (PRS_AsAoD) |
PSS009505| European Ancestry| 314,560 individuals |
PGP000268 | Tcheandjieu C et al. Nat Genet (2022) |
Reported Trait: Surgical intervention (aorta) | HR: 1.42 | — | — | sex, age at recruitment, smoking, SBP, DBP | — |
PPM012714 | PGS002236 (PRS_AsAoD) |
PSS009501| European Ancestry| 11,573 individuals |
PGP000268 | Tcheandjieu C et al. Nat Genet (2022) |
Reported Trait: Ascending aortic diameter in females | β: 0.59 | — | — | age, sex, BSA, top five principal components | beta unit is mm |
PPM012718 | PGS002236 (PRS_AsAoD) |
PSS009502| African Ancestry| 86,880 individuals |
PGP000268 | Tcheandjieu C et al. Nat Genet (2022) |
Reported Trait: Prevalent thoracic aortic aneurysm | OR: 1.08 [1.0, 1.18] | — | — | — | — |
PPM012719 | PGS002236 (PRS_AsAoD) |
PSS009503| European Ancestry| 523,178 individuals |
PGP000268 | Tcheandjieu C et al. Nat Genet (2022) |
Reported Trait: Surgical intervention in thoracic aneurysm | OR: 1.57 [1.15, 2.15] | — | — | — | — |
PPM012720 | PGS002236 (PRS_AsAoD) |
PSS009505| European Ancestry| 314,560 individuals |
PGP000268 | Tcheandjieu C et al. Nat Genet (2022) |
Reported Trait: Surgical intervention (aorta) | OR: 1.44 | — | — | — | — |
PPM012908 | PGS002267 (PRS89_AA) |
PSS009608| European Ancestry| 385,621 individuals |
PGP000296 | Pirruccello JP et al. Nat Genet (2021) |
Reported Trait: Incident thoracic aortic aneurysm or dissection | HR: 1.43 [1.32, 1.54] | — | — | Sex, prevalent diagnoses of type 2 diabetes or hypertension, tobacco smoking history (the number of pack years of tobacco smoking), body mass (the cubic natural spline of body mass index) and age (the cubic natural spline of age at enrollment). | — |
PPM021713 | PGS004927 (score_resint_max_aa_shortaxis_cm) |
PSS011759| European Ancestry| 4,394 individuals |
PGP000663 | Pirruccello JP et al. Eur Heart J (2024) |
Reported Trait: Ascending aortic diameter | — | — | R²: 0.39499 Beta (combined score): 0.965 [0.93, 1.0] |
Clinical covariates (age, age^2, sex, height, weight, BMI, heart rate, systolic blood pressure, diastolic blood pressure, and a history of hypertension, diabetes, and hyperlipidemia) | Linear regression of combined score (PGS + clinical covariates) |
PPM021712 | PGS004927 (score_resint_max_aa_shortaxis_cm) |
PSS011759| European Ancestry| 4,394 individuals |
PGP000663 | Pirruccello JP et al. Eur Heart J (2024) |
Reported Trait: Ascending aortic diameter | β: 1.062 [0.981, 1.144] | — | R²: 0.12862 | — | Linear regression |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS009501 | International Classification of Disease 9 and 10 (ICD-9 codes: 441.1, 441.2, 441.01 and ICD-10 codes: I71.01, I71.1, I71.2); Office of Population and Censuses Surveys (OPCS-4 codes: K33.*, L18.2, L19.2, L20.2, L21.2, L22.1, L27.3, L28.3); and Current Procedural Terminology (CPT: 2107426-2107627, 2211645-2211647, 42740410-42740416, 42740439, 45887730-45890065). For survival modeling of thoracic aortic aneurysm in the UKB individuals with congenital anomalies of the outflow tracts (ICD-10 Q25), syndromic disease involving the aorta (ICD-10 Q87*, Q96, Q93.82), or traumatic injury to the heart or aorta (ICD-10 S25.0) were excluded. | — | 11,573 individuals | — | European | — | UKB | — |
PSS009502 | International Classification of Disease 9 and 10 (ICD-9 codes: 441.1, 441.2, 441.01 and ICD-10 codes: I71.01, I71.1, I71.2); Office of Population and Censuses Surveys (OPCS-4 codes: K33.*, L18.2, L19.2, L20.2, L21.2, L22.1, L27.3, L28.3); and Current Procedural Terminology (CPT: 2107426-2107627, 2211645-2211647, 42740410-42740416, 42740439, 45887730-45890065). For survival modeling of thoracic aortic aneurysm in the UKB individuals with congenital anomalies of the outflow tracts (ICD-10 Q25), syndromic disease involving the aorta (ICD-10 Q87*, Q96, Q93.82), or traumatic injury to the heart or aorta (ICD-10 S25.0) were excluded. | — | [
|
— | African American or Afro-Caribbean (African American) |
— | MVP, PMB | — |
PSS009503 | International Classification of Disease 9 and 10 (ICD-9 codes: 441.1, 441.2, 441.01 and ICD-10 codes: I71.01, I71.1, I71.2); Office of Population and Censuses Surveys (OPCS-4 codes: K33.*, L18.2, L19.2, L20.2, L21.2, L22.1, L27.3, L28.3); and Current Procedural Terminology (CPT: 2107426-2107627, 2211645-2211647, 42740410-42740416, 42740439, 45887730-45890065). For survival modeling of thoracic aortic aneurysm in the UKB individuals with congenital anomalies of the outflow tracts (ICD-10 Q25), syndromic disease involving the aorta (ICD-10 Q87*, Q96, Q93.82), or traumatic injury to the heart or aorta (ICD-10 S25.0) were excluded. | — | [
|
— | European | — | FinnGen, MVP, PMB, UKB | — |
PSS009504 | International Classification of Disease 9 and 10 (ICD-9 codes: 441.1, 441.2, 441.01 and ICD-10 codes: I71.01, I71.1, I71.2); Office of Population and Censuses Surveys (OPCS-4 codes: K33.*, L18.2, L19.2, L20.2, L21.2, L22.1, L27.3, L28.3); and Current Procedural Terminology (CPT: 2107426-2107627, 2211645-2211647, 42740410-42740416, 42740439, 45887730-45890065). For survival modeling of thoracic aortic aneurysm in the UKB individuals with congenital anomalies of the outflow tracts (ICD-10 Q25), syndromic disease involving the aorta (ICD-10 Q87*, Q96, Q93.82), or traumatic injury to the heart or aorta (ICD-10 S25.0) were excluded. | — | [
|
— | Hispanic or Latin American (Hispanic American) |
— | MVP | — |
PSS009505 | International Classification of Disease 9 and 10 (ICD-9 codes: 441.1, 441.2, 441.01 and ICD-10 codes: I71.01, I71.1, I71.2); Office of Population and Censuses Surveys (OPCS-4 codes: K33.*, L18.2, L19.2, L20.2, L21.2, L22.1, L27.3, L28.3); and Current Procedural Terminology (CPT: 2107426-2107627, 2211645-2211647, 42740410-42740416, 42740439, 45887730-45890065). For survival modeling of thoracic aortic aneurysm in the UKB individuals with congenital anomalies of the outflow tracts (ICD-10 Q25), syndromic disease involving the aorta (ICD-10 Q87*, Q96, Q93.82), or traumatic injury to the heart or aorta (ICD-10 S25.0) were excluded. | — | 314,560 individuals | — | European | — | UKB | — |
PSS011759 | — | — | 4,394 individuals, 48.0 % Male samples |
Mean = 65.0 years | European | — | UKB | UK Biobank imaging participants, validation set |
PSS009608 | — | Median = 11.2 yrs | [
|
— | European (British, Irish) |
— | UKB | — |