Trait: PP interval

Experimental Factor Ontology (EFO) Information
Identifier EFO_0600085
Description An interval measured from the onset of the P wave in one PQRST wave complex to the onset of the P wave in the following PQRST wave complex.
Trait category
Cardiovascular measurement
Mapped terms 3 mapped terms
  • CMO:0000278
  • https://biobank.ndph.ox.ac.uk/showcase/field.cgi?id=22334
  • https://doi.org/10.1101/2021.09.02.21262942

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001903
(portability-PLR_ECG_PP_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 PP interval PP interval 4,368
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001903/ScoringFiles/PGS001903.txt.gz
PGS002117
(portability-ldpred2_ECG_PP_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 PP interval PP interval 667,705
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002117/ScoringFiles/PGS002117.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010108 PGS001903
(portability-PLR_ECG_PP_interval)
 PSS009137|
European Ancestry|
191 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.1015 [-0.0493, 0.2478] sex, age, birth date, deprivation index, 16 PCs —
PPM010109 PGS001903
(portability-PLR_ECG_PP_interval)
 PSS008691|
European Ancestry|
225 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.1429 [0.006, 0.2745] sex, age, birth date, deprivation index, 16 PCs —
PPM010110 PGS001903
(portability-PLR_ECG_PP_interval)
 PSS008465|
Greater Middle Eastern Ancestry|
25 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): -0.3367 [-0.9398, 0.7761] sex, age, birth date, deprivation index, 16 PCs —
PPM010111 PGS001903
(portability-PLR_ECG_PP_interval)
 PSS008245|
South Asian Ancestry|
165 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.0817 [-0.0824, 0.2415] sex, age, birth date, deprivation index, 16 PCs —
PPM010113 PGS001903
(portability-PLR_ECG_PP_interval)
 PSS007809|
African Ancestry|
49 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.0201 [-0.349, 0.3838] sex, age, birth date, deprivation index, 16 PCs —
PPM010114 PGS001903
(portability-PLR_ECG_PP_interval)
 PSS008913|
African Ancestry|
61 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.2346 [-0.0787, 0.5057] sex, age, birth date, deprivation index, 16 PCs —
PPM010107 PGS001903
(portability-PLR_ECG_PP_interval)
 PSS009363|
European Ancestry|
1,036 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.1051 [0.0439, 0.1655] sex, age, birth date, deprivation index, 16 PCs —
PPM010112 PGS001903
(portability-PLR_ECG_PP_interval)
 PSS008023|
East Asian Ancestry|
73 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.144 [-0.1314, 0.3987] sex, age, birth date, deprivation index, 16 PCs —
PPM011796 PGS002117
(portability-ldpred2_ECG_PP_interval)
 PSS008023|
East Asian Ancestry|
73 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.1932 [-0.0813, 0.4405] sex, age, birth date, deprivation index, 16 PCs —
PPM011791 PGS002117
(portability-ldpred2_ECG_PP_interval)
 PSS009363|
European Ancestry|
1,036 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.0979 [0.0366, 0.1584] sex, age, birth date, deprivation index, 16 PCs —
PPM011792 PGS002117
(portability-ldpred2_ECG_PP_interval)
 PSS009137|
European Ancestry|
191 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.2685 [0.1234, 0.4024] sex, age, birth date, deprivation index, 16 PCs —
PPM011793 PGS002117
(portability-ldpred2_ECG_PP_interval)
 PSS008691|
European Ancestry|
225 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.1491 [0.0123, 0.2804] sex, age, birth date, deprivation index, 16 PCs —
PPM011794 PGS002117
(portability-ldpred2_ECG_PP_interval)
 PSS008465|
Greater Middle Eastern Ancestry|
25 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.5089 [-0.6776, 0.9601] sex, age, birth date, deprivation index, 16 PCs —
PPM011795 PGS002117
(portability-ldpred2_ECG_PP_interval)
 PSS008245|
South Asian Ancestry|
165 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.0824 [-0.0817, 0.2421] sex, age, birth date, deprivation index, 16 PCs —
PPM011797 PGS002117
(portability-ldpred2_ECG_PP_interval)
 PSS007809|
African Ancestry|
49 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.0366 [-0.3344, 0.3978] sex, age, birth date, deprivation index, 16 PCs —
PPM011798 PGS002117
(portability-ldpred2_ECG_PP_interval)
 PSS008913|
African Ancestry|
61 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: PP interval — — Partial Correlation (partial-r): 0.0184 [-0.2909, 0.3242] sex, age, birth date, deprivation index, 16 PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008465 — — 25 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS009137 — — 191 individuals — European Poland (NE Europe) UKB —
PSS008691 — — 225 individuals — European Italy (South Europe) UKB —
PSS008913 — — 61 individuals — African unspecified Nigeria (West Africa) UKB —
PSS008245 — — 165 individuals — South Asian India (South Asia) UKB —
PSS009363 — — 1,036 individuals — European UK (+ Ireland) UKB —
PSS008023 — — 73 individuals — East Asian China (East Asia) UKB —
PSS007809 — — 49 individuals — African American or Afro-Caribbean Carribean UKB —