Trait Information | |
Identifier | MONDO_0021661 |
Description | Atherosclerosis of the coronary vasculature. [NCIT: C35505] | Trait category |
Cardiovascular disease
|
Synonyms |
5 synonyms
|
Mapped terms |
6 mapped terms
|
Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants |
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS001839 (portability-PLR_411.4) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Coronary atherosclerosis | coronary atherosclerosis | 25,425 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001839/ScoringFiles/PGS001839.txt.gz |
PGS002048 (portability-ldpred2_411.4) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Coronary atherosclerosis | coronary atherosclerosis | 762,124 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002048/ScoringFiles/PGS002048.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM009602 | PGS001839 (portability-PLR_411.4) |
PSS009311| European Ancestry| 19,308 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.1021 [0.0881, 0.1161] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009603 | PGS001839 (portability-PLR_411.4) |
PSS009085| European Ancestry| 4,021 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.1391 [0.1086, 0.1693] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009604 | PGS001839 (portability-PLR_411.4) |
PSS008639| European Ancestry| 6,492 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.0994 [0.0753, 0.1235] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009605 | PGS001839 (portability-PLR_411.4) |
PSS008413| Greater Middle Eastern Ancestry| 1,158 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.0815 [0.0235, 0.1389] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009607 | PGS001839 (portability-PLR_411.4) |
PSS007975| East Asian Ancestry| 1,794 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.0452 [-0.0014, 0.0915] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009608 | PGS001839 (portability-PLR_411.4) |
PSS007758| African Ancestry| 2,396 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.0269 [-0.0133, 0.067] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009609 | PGS001839 (portability-PLR_411.4) |
PSS008862| African Ancestry| 3,793 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.0157 [-0.0163, 0.0475] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009606 | PGS001839 (portability-PLR_411.4) |
PSS008193| South Asian Ancestry| 6,070 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.1113 [0.0863, 0.1361] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011246 | PGS002048 (portability-ldpred2_411.4) |
PSS009311| European Ancestry| 19,308 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.1078 [0.0938, 0.1217] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011247 | PGS002048 (portability-ldpred2_411.4) |
PSS009085| European Ancestry| 4,021 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.1435 [0.113, 0.1737] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011248 | PGS002048 (portability-ldpred2_411.4) |
PSS008639| European Ancestry| 6,492 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.1061 [0.0819, 0.1301] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011250 | PGS002048 (portability-ldpred2_411.4) |
PSS008193| South Asian Ancestry| 6,070 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.1246 [0.0997, 0.1493] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011251 | PGS002048 (portability-ldpred2_411.4) |
PSS007975| East Asian Ancestry| 1,794 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.0522 [0.0057, 0.0985] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011252 | PGS002048 (portability-ldpred2_411.4) |
PSS007758| African Ancestry| 2,396 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.0358 [-0.0044, 0.0759] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011253 | PGS002048 (portability-ldpred2_411.4) |
PSS008862| African Ancestry| 3,793 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.01 [-0.0219, 0.0419] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011249 | PGS002048 (portability-ldpred2_411.4) |
PSS008413| Greater Middle Eastern Ancestry| 1,158 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Coronary atherosclerosis | — | — | Partial Correlation (partial-r): 0.0727 [0.0146, 0.1302] | sex, age, birth date, deprivation index, 16 PCs | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS007975 | — | — | 1,794 individuals | — | East Asian | China (East Asia) | UKB | — |
PSS008413 | — | — | 1,158 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iran (Middle East) | UKB | — |
PSS007758 | — | — | 2,396 individuals | — | African American or Afro-Caribbean | Carribean | UKB | — |
PSS008639 | — | — | 6,492 individuals | — | European | Italy (South Europe) | UKB | — |
PSS009085 | — | — | 4,021 individuals | — | European | Poland (NE Europe) | UKB | — |
PSS008862 | — | — | 3,793 individuals | — | African unspecified | Nigeria (West Africa) | UKB | — |
PSS009311 | — | — | 19,308 individuals | — | European | UK (+ Ireland) | UKB | — |
PSS008193 | — | — | 6,070 individuals | — | South Asian | India (South Asia) | UKB | — |