PGS Publication: PGP000076

Publication Information (EuropePMC)
Title Genetic Risk, Adherence to a Healthy Lifestyle, and Coronary Disease.
PubMed ID 27959714(Europe PMC)
doi 10.1056/NEJMoa1605086
Publication Date Nov. 13, 2016
Journal N Engl J Med
Author(s) Khera AV, Emdin CA, Drake I, Natarajan P, Bick AG, Cook NR, Chasman DI, Baber U, Mehran R, Rader DJ, Fuster V, Boerwinkle E, Melander O, Orho-Melander M, Ridker PM, Kathiresan S.
Released in PGS Catalog: April 29, 2020

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Hispanic or Latin American
Additional Diverse Ancestries
Not Reported

External PGS Evaluated By This Publication

Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000011
(GRS50)
 PGP000004 |
Tada H et al. Eur Heart J (2015)
 Coronary artery disease coronary artery disease 50
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000011/ScoringFiles/PGS000011.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM000496 PGS000011
(GRS50)
 PSS000285|
European Ancestry|
22,389 individuals
 PGP000076 |
Khera AV et al. N Engl J Med (2016)
|Ext.		 Reported Trait: Incident coronary artery disease — — Hazard Ratio (HR; top 20% of score vs bottom 20%): 1.98 [1.76, 2.23] age, sex, self reported education level —
PPM000495 PGS000011
(GRS50)
 PSS000286|
European Ancestry|
21,222 individuals
 PGP000076 |
Khera AV et al. N Engl J Med (2016)
|Ext.		 Reported Trait: Incident coronary artery disease — — Hazard Ratio (HR; top 20% of score vs bottom 20%): 1.94 [1.58, 2.39] age, self reported education level, treatment (vitamin E vs aspirin), 5 genetic principal components —
PPM000494 PGS000011
(GRS50)
 PSS000283|
European Ancestry|
7,814 individuals
 PGP000076 |
Khera AV et al. N Engl J Med (2016)
|Ext.		 Reported Trait: Incident coronary artery disease — — Hazard Ratio (HR; top 20% of score vs bottom 20%): 1.75 [1.46, 2.1] age, sex, self reported education level, 5 genetic principal components —
PPM000497 PGS000011
(GRS50)
 PSS000284|
European Ancestry|
4,260 individuals
 PGP000076 |
Khera AV et al. N Engl J Med (2016)
|Ext.		 Reported Trait: Coronary artery calcification — — Agatston score (mean, top 20% of GRS): 46.0 [9.0, 54.0]
Agatston score (mean, btttom 25% of GRS): 21.0 [18.0, 25.0]		 — —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000286 Composite endpoint of either: myocardial infarction, coronary revascularization, death from coronary causes. Mean = 20.5 years
[
  • 971 cases
  • , 20,251 controls
]
,
0.0 % Male samples
 Mean = 54.2 years
Sd = 7.1 years		 European — WGHS —
PSS000283 Composite endpoint of either: myocardial infarction, coronary revascularization, death from coronary causes. Mean = 18.8 years
[
  • 1,230 cases
  • , 6,584 controls
]
,
45.0 % Male samples
 Mean = 54.0 years
Sd = 5.7 years		 European — ARIC —
PSS000284 Cross-sectional analysis of baseline scores for coronary artery calcification (Agatston score) — 4,260 individuals,
44.0 % Male samples
 Mean = 69.1 years
Sd = 6.0 years		 European — BioImage —
PSS000285 Composite endpoint of either: myocardial infarction, coronary revascularization, death from coronary causes. Mean = 19.4 years
[
  • 2,902 cases
  • , 19,487 controls
]
,
38.0 % Male samples
 Mean = 58.0 years
Sd = 7.7 years		 European — MDC-CC —