Trait: chronic obstructive pulmonary disease

Experimental Factor Ontology (EFO) Information
Identifier EFO_0000341
Description A chronic and progressive lung disorder characterized by the loss of elasticity of the bronchial tree and the air sacs, destruction of the air sacs wall, thickening of the bronchial wall, and mucous accumulation in the bronchial tree. The pathologic changes result in the disruption of the air flow in the bronchial airways. Signs and symptoms include shortness of breath, wheezing, productive cough, and chest tightness. The two main types of chronic obstructive pulmonary disease are chronic obstructive bronchitis and emphysema. [NCIT: C3199]
Trait category
Other disease
Synonyms 58 synonyms
  • Airflow Obstruction, Chronic
  • Airflow Obstructions, Chronic
  • CAFL - Chronic airflow limitation
  • CAL - Chronic airflow limitation
  • CAO - Chronic airflow obstruction
  • CHRONIC OBSTRUCTIVE AIRWAY DIS
  • CHRONIC OBSTRUCTIVE LUNG DIS
  • CHRONIC OBSTRUCTIVE PULM DIS
  • CHRONIC OBSTRUCTIVE PULMONARY DISEASE, (COPD)
  • COAD
  • COAD - Chronic obstructive airways disease
  • COLD
  • COLD (chronic obstructive lung disease)
  • COLD - Chronic obstructive lung disease
  • COPD
  • COPD - Chronic obstructive pulmonary disease
  • COPD NOS
  • COPD, CHRONIC OBSTRUCTIVE PULMONARY DISEASE
  • COPD, chronic obstructive pulmonary disease
  • Chronic Airflow Obstruction
  • Chronic Airflow Obstructions
  • Chronic Obstructive Airways Disease
  • Chronic Obstructive Lung Disease
  • Chronic Obstructive Pulmonary Disease (COPD)
  • Chronic airflow limitation
  • Chronic airway disease
  • Chronic airway obstruction
  • Chronic irreversible airway obstruction
  • Chronic obstructive lung disease, NEC
  • Chronic obstructive lung disease, NOS
  • Chronic obstructive pulmonary disease NOS
  • Chronic obstructive pulmonary disease finding
  • Chronic obstructive pulmonary disease finding (finding)
  • DISEASE (COPD), CHRONIC OBSTRUCTIVE
  • Dops
  • OBSTRUCTIVE PULMONARY DISEASE (COPD), CHRONIC
  • PULM DIS CHRONIC OBSTRUCTIVE
  • PULMONARY DISEASE (COPD), CHRONIC OBSTRUCTIVE
  • Pulmonary Disease, Chronic Obstructive
  • chronic airway obstruction, NEC in ICD9CM_2006
  • chronic airway obstruction, not elsewhere classified
  • chronic obstructive airway disease
  • chronic obstructive airways disease
  • chronic obstructive airways disease NOS
  • chronic obstructive airways disease NOS (disorder)
  • chronic obstructive lung disease
  • chronic obstructive lung disease (disorder)
  • chronic obstructive lung disease [Ambiguous]
  • chronic obstructive pulmonary disease
  • chronic obstructive pulmonary disease (COPD)
  • chronic obstructive pulmonary disease and allied conditions
  • chronic obstructive pulmonary disease, (COPD)
  • cold
  • cold (chronic obstructive lung disease)
  • disease (COPD), chronic obstructive
  • obstructive lung disease, chronic
  • obstructive pulmonary disease (COPD), chronic
  • pulmonary disease (COPD), chronic obstructive
Mapped terms 18 mapped terms
  • DOID:3083
  • ICD10:J44
  • ICD9:490-496.99
  • ICD9:496
  • MEDGEN:9818
  • MESH:D029424
  • MONDO:0005002
  • MeSH:D029424
  • MedDRA:10009033
  • NCIT:C3199
  • NCIt:C3199
  • OMIM:606963
  • SCTID:13645005
  • SNOMEDCT:13645005
  • SNOMEDCT:413846005
  • SNOMEDCT:84162001
  • UMLS:C0024117
  • icd11.foundation:133207228
Child trait(s) emphysema

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Note: This table shows all PGS for "chronic obstructive pulmonary disease" and any child terms of this trait in the EFO hierarchy by default.
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001326
(GBE_HC431)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Emphysema emphysema 42
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001326/ScoringFiles/PGS001326.txt.gz
PGS001332
(GBE_HC442)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Chronic obstructive pulmonary disease chronic obstructive pulmonary disease 482
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001332/ScoringFiles/PGS001332.txt.gz
PGS001333
(GBE_HC1582)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Chronic obstructive pulmonary disease (algorithmically-defined) chronic obstructive pulmonary disease 569
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001333/ScoringFiles/PGS001333.txt.gz
PGS001334
(GBE_HC1035)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other chronic obstructive pulmonary disease (time-to-event) chronic obstructive pulmonary disease 498
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001334/ScoringFiles/PGS001334.txt.gz
PGS001783
(1kgeur_gbmi_COPD_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Chronic obstructive pulmonary disease chronic obstructive pulmonary disease 884,139
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001783/ScoringFiles/PGS001783.txt.gz
PGS001788
(1kgeur_gbmi_leaveUKBBout_COPD_pst_eff_a1_b0.5_phiauto)
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Chronic obstructive pulmonary disease chronic obstructive pulmonary disease 910,082
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001788/ScoringFiles/PGS001788.txt.gz
PGS001850
(portability-PLR_496)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Chronic airway obstruction chronic obstructive pulmonary disease 7,347
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001850/ScoringFiles/PGS001850.txt.gz
PGS002062
(portability-ldpred2_496)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Chronic airway obstruction chronic obstructive pulmonary disease 811,003
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002062/ScoringFiles/PGS002062.txt.gz
PGS004466
(disease.J44.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 J44 (Other chronic obstructive pulmonary disease) chronic obstructive pulmonary disease 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004466/ScoringFiles/PGS004466.txt.gz
PGS004536
(meta.J44.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 J44 (Other chronic obstructive pulmonary disease) chronic obstructive pulmonary disease 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004536/ScoringFiles/PGS004536.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM009117 PGS001326
(GBE_HC431)
 PSS004496|
African Ancestry|
6,497 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Emphysema — AUROC: 0.79508 [0.66687, 0.92329] R²: 0.11615
Incremental AUROC (full-covars): -0.00299
PGS R2 (no covariates): 6e-05
PGS AUROC (no covariates): 0.54363 [0.35853, 0.72873]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009118 PGS001326
(GBE_HC431)
 PSS004497|
East Asian Ancestry|
1,704 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Emphysema — AUROC: 0.98854 [0.98287, 0.99422] R²: 0.35967
Incremental AUROC (full-covars): 0.00059
PGS R2 (no covariates): 0.01376
PGS AUROC (no covariates): 0.67098 [0.43987, 0.90208]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009119 PGS001326
(GBE_HC431)
 PSS004498|
European Ancestry|
24,905 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Emphysema — AUROC: 0.7867 [0.75313, 0.82026] R²: 0.09488
Incremental AUROC (full-covars): -0.00065
PGS R2 (no covariates): 0.0
PGS AUROC (no covariates): 0.49994 [0.45601, 0.54388]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009120 PGS001326
(GBE_HC431)
 PSS004499|
South Asian Ancestry|
7,831 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Emphysema — AUROC: 0.78275 [0.67463, 0.89087] R²: 0.0813
Incremental AUROC (full-covars): 0.00398
PGS R2 (no covariates): 0.00648
PGS AUROC (no covariates): 0.59809 [0.42688, 0.7693]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009121 PGS001326
(GBE_HC431)
 PSS004500|
European Ancestry|
67,425 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Emphysema — AUROC: 0.72797 [0.70437, 0.75156] R²: 0.05838
Incremental AUROC (full-covars): 0.00547
PGS R2 (no covariates): 0.00531
PGS AUROC (no covariates): 0.56911 [0.54137, 0.59684]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009146 PGS001332
(GBE_HC442)
 PSS004506|
African Ancestry|
6,497 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Chronic obstructive airways disease/copd — AUROC: 0.75825 [0.69744, 0.81905] R²: 0.08985
Incremental AUROC (full-covars): 0.00297
PGS R2 (no covariates): 0.00366
PGS AUROC (no covariates): 0.56943 [0.4939, 0.64496]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009147 PGS001332
(GBE_HC442)
 PSS004507|
East Asian Ancestry|
1,704 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Chronic obstructive airways disease/copd — AUROC: 0.93404 [0.85456, 1.0] R²: 0.35918
Incremental AUROC (full-covars): 0.00775
PGS R2 (no covariates): 0.05713
PGS AUROC (no covariates): 0.78102 [0.65685, 0.90519]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009148 PGS001332
(GBE_HC442)
 PSS004508|
European Ancestry|
24,905 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Chronic obstructive airways disease/copd — AUROC: 0.75808 [0.74076, 0.77539] R²: 0.10489
Incremental AUROC (full-covars): 0.0013
PGS R2 (no covariates): 0.00194
PGS AUROC (no covariates): 0.53674 [0.51446, 0.55902]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009149 PGS001332
(GBE_HC442)
 PSS004509|
South Asian Ancestry|
7,831 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Chronic obstructive airways disease/copd — AUROC: 0.74266 [0.70089, 0.78443] R²: 0.08552
Incremental AUROC (full-covars): -0.00028
PGS R2 (no covariates): 0.00048
PGS AUROC (no covariates): 0.51815 [0.46516, 0.57113]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009150 PGS001332
(GBE_HC442)
 PSS004510|
European Ancestry|
67,425 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Chronic obstructive airways disease/copd — AUROC: 0.73063 [0.71971, 0.74156] R²: 0.08401
Incremental AUROC (full-covars): 0.003
PGS R2 (no covariates): 0.00235
PGS AUROC (no covariates): 0.53971 [0.52633, 0.5531]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009151 PGS001333
(GBE_HC1582)
 PSS004297|
African Ancestry|
6,497 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: AD chronic obstructive pulmonary disease — AUROC: 0.68968 [0.6281, 0.75125] R²: 0.05389
Incremental AUROC (full-covars): -0.00542
PGS R2 (no covariates): 5e-05
PGS AUROC (no covariates): 0.49374 [0.43492, 0.55257]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009152 PGS001333
(GBE_HC1582)
 PSS004298|
East Asian Ancestry|
1,704 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: AD chronic obstructive pulmonary disease — AUROC: 0.77182 [0.67988, 0.86376] R²: 0.12635
Incremental AUROC (full-covars): -0.00429
PGS R2 (no covariates): 0.00238
PGS AUROC (no covariates): 0.55811 [0.43123, 0.68498]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009153 PGS001333
(GBE_HC1582)
 PSS004299|
European Ancestry|
24,905 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: AD chronic obstructive pulmonary disease — AUROC: 0.71622 [0.70023, 0.7322] R²: 0.08141
Incremental AUROC (full-covars): 0.00289
PGS R2 (no covariates): 0.00236
PGS AUROC (no covariates): 0.53939 [0.52155, 0.55723]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009154 PGS001333
(GBE_HC1582)
 PSS004300|
South Asian Ancestry|
7,831 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: AD chronic obstructive pulmonary disease — AUROC: 0.71121 [0.67474, 0.74767] R²: 0.06785
Incremental AUROC (full-covars): 0.00468
PGS R2 (no covariates): 0.00251
PGS AUROC (no covariates): 0.53996 [0.49615, 0.58377]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009155 PGS001333
(GBE_HC1582)
 PSS004301|
European Ancestry|
67,425 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: AD chronic obstructive pulmonary disease — AUROC: 0.70059 [0.69045, 0.71072] R²: 0.06924
Incremental AUROC (full-covars): 0.0031
PGS R2 (no covariates): 0.00218
PGS AUROC (no covariates): 0.5364 [0.52484, 0.54796]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009156 PGS001334
(GBE_HC1035)
 PSS004079|
African Ancestry|
6,497 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE other chronic obstructive pulmonary disease — AUROC: 0.75968 [0.69978, 0.81959] R²: 0.09174
Incremental AUROC (full-covars): -0.0023
PGS R2 (no covariates): 0.00029
PGS AUROC (no covariates): 0.4865 [0.41003, 0.56298]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009157 PGS001334
(GBE_HC1035)
 PSS004080|
East Asian Ancestry|
1,704 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE other chronic obstructive pulmonary disease — AUROC: 0.92777 [0.86245, 0.9931] R²: 0.33262
Incremental AUROC (full-covars): 0.00135
PGS R2 (no covariates): 0.00048
PGS AUROC (no covariates): 0.52185 [0.32406, 0.71963]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009158 PGS001334
(GBE_HC1035)
 PSS004081|
European Ancestry|
24,905 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE other chronic obstructive pulmonary disease — AUROC: 0.75602 [0.73955, 0.77249] R²: 0.10564
Incremental AUROC (full-covars): 0.00136
PGS R2 (no covariates): 0.00195
PGS AUROC (no covariates): 0.53598 [0.51506, 0.55689]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009159 PGS001334
(GBE_HC1035)
 PSS004082|
South Asian Ancestry|
7,831 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE other chronic obstructive pulmonary disease — AUROC: 0.74851 [0.70987, 0.78716] R²: 0.09156
Incremental AUROC (full-covars): 0.00157
PGS R2 (no covariates): 0.00202
PGS AUROC (no covariates): 0.53954 [0.49035, 0.58873]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009160 PGS001334
(GBE_HC1035)
 PSS004083|
European Ancestry|
67,425 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: TTE other chronic obstructive pulmonary disease — AUROC: 0.72542 [0.71492, 0.73591] R²: 0.0827
Incremental AUROC (full-covars): 0.00368
PGS R2 (no covariates): 0.00314
PGS AUROC (no covariates): 0.54658 [0.5339, 0.55926]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM009312 PGS001783
(1kgeur_gbmi_COPD_pst_eff_a1_b0.5_phiauto)
 PSS007694|
European Ancestry|
7,128 individuals
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Reported Trait: Chronic obstructive pulmonary disease — AUROC: 0.74 Nagelkerke's R2 (covariates regressed out): 0.03809 sex,age, 20PCs —
PPM009292 PGS001788
(1kgeur_gbmi_leaveUKBBout_COPD_pst_eff_a1_b0.5_phiauto)
 PSS007711|
European Ancestry|
337,168 individuals
 PGP000262 |
Wang Y et al. Cell Genom (2023)
 Reported Trait: Chronic obstructive pulmonary disease — AUROC: 0.715 Nagelkerke's R2 (covariates regressed out): 0.0163 sex,age,age2,age*sex,age^2*sex, 20PCs —
PPM009690 PGS001850
(portability-PLR_496)
 PSS009325|
European Ancestry|
18,735 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): 0.0241 [0.0098, 0.0384] sex, age, birth date, deprivation index, 16 PCs —
PPM009691 PGS001850
(portability-PLR_496)
 PSS009099|
European Ancestry|
3,959 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): 0.0029 [-0.0284, 0.0341] sex, age, birth date, deprivation index, 16 PCs —
PPM009692 PGS001850
(portability-PLR_496)
 PSS008653|
European Ancestry|
6,311 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): 0.0292 [0.0045, 0.0539] sex, age, birth date, deprivation index, 16 PCs —
PPM009694 PGS001850
(portability-PLR_496)
 PSS008207|
South Asian Ancestry|
5,753 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): -0.0056 [-0.0315, 0.0203] sex, age, birth date, deprivation index, 16 PCs —
PPM009697 PGS001850
(portability-PLR_496)
 PSS008876|
African Ancestry|
3,652 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): -0.0066 [-0.0391, 0.0259] sex, age, birth date, deprivation index, 16 PCs —
PPM009693 PGS001850
(portability-PLR_496)
 PSS008427|
Greater Middle Eastern Ancestry|
1,122 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): 0.0083 [-0.0508, 0.0673] sex, age, birth date, deprivation index, 16 PCs —
PPM009695 PGS001850
(portability-PLR_496)
 PSS007989|
East Asian Ancestry|
1,729 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): -0.017 [-0.0644, 0.0304] sex, age, birth date, deprivation index, 16 PCs —
PPM009696 PGS001850
(portability-PLR_496)
 PSS007772|
African Ancestry|
2,270 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): 0.0156 [-0.0258, 0.0569] sex, age, birth date, deprivation index, 16 PCs —
PPM011359 PGS002062
(portability-ldpred2_496)
 PSS009099|
European Ancestry|
3,959 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): 0.0118 [-0.0194, 0.043] sex, age, birth date, deprivation index, 16 PCs —
PPM011360 PGS002062
(portability-ldpred2_496)
 PSS008653|
European Ancestry|
6,311 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): 0.0499 [0.0252, 0.0745] sex, age, birth date, deprivation index, 16 PCs —
PPM011361 PGS002062
(portability-ldpred2_496)
 PSS008427|
Greater Middle Eastern Ancestry|
1,122 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): 0.0345 [-0.0246, 0.0933] sex, age, birth date, deprivation index, 16 PCs —
PPM011362 PGS002062
(portability-ldpred2_496)
 PSS008207|
South Asian Ancestry|
5,753 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): 0.0272 [0.0013, 0.053] sex, age, birth date, deprivation index, 16 PCs —
PPM011363 PGS002062
(portability-ldpred2_496)
 PSS007989|
East Asian Ancestry|
1,729 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): -0.0227 [-0.07, 0.0248] sex, age, birth date, deprivation index, 16 PCs —
PPM011364 PGS002062
(portability-ldpred2_496)
 PSS007772|
African Ancestry|
2,270 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): 0.0422 sex, age, birth date, deprivation index, 16 PCs —
PPM011365 PGS002062
(portability-ldpred2_496)
 PSS008876|
African Ancestry|
3,652 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): -0.0266 [-0.0591, 0.0059] sex, age, birth date, deprivation index, 16 PCs —
PPM011358 PGS002062
(portability-ldpred2_496)
 PSS009325|
European Ancestry|
18,735 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Chronic airway obstruction — — Partial Correlation (partial-r): 0.047 [0.0327, 0.0613] sex, age, birth date, deprivation index, 16 PCs —
PPM020581 PGS004466
(disease.J44.score)
 PSS011364|
European Ancestry|
56,192 individuals
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Reported Trait: J44 (Other chronic obstructive pulmonary disease) OR: 1.30839 — — — —
PPM020651 PGS004536
(meta.J44.score)
 PSS011364|
European Ancestry|
56,192 individuals
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Reported Trait: J44 (Other chronic obstructive pulmonary disease) OR: 1.48758 — — — —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008653 — — 6,311 individuals — European Italy (South Europe) UKB —
PSS004297 — —
[
  • 89 cases
  • , 6,408 controls
]
 — African unspecified — UKB —
PSS004298 — —
[
  • 17 cases
  • , 1,687 controls
]
 — East Asian — UKB —
PSS004299 — —
[
  • 1,002 cases
  • , 23,903 controls
]
 — European non-white British ancestry UKB —
PSS004300 — —
[
  • 186 cases
  • , 7,645 controls
]
 — South Asian — UKB —
PSS004301 — —
[
  • 2,525 cases
  • , 64,900 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS007772 — — 2,270 individuals — African American or Afro-Caribbean Carribean UKB —
PSS008427 — — 1,122 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS009325 — — 18,735 individuals — European UK (+ Ireland) UKB —
PSS004079 — —
[
  • 63 cases
  • , 6,434 controls
]
 — African unspecified — UKB —
PSS004080 — —
[
  • 7 cases
  • , 1,697 controls
]
 — East Asian — UKB —
PSS004081 — —
[
  • 754 cases
  • , 24,151 controls
]
 — European non-white British ancestry UKB —
PSS004082 — —
[
  • 148 cases
  • , 7,683 controls
]
 — South Asian — UKB —
PSS004083 — —
[
  • 2,080 cases
  • , 65,345 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS007694 — —
[
  • 132 cases
  • , 6,995 controls
]
 — European — CanPath —
PSS009099 — — 3,959 individuals — European Poland (NE Europe) UKB —
PSS007711 — —
[
  • 12,063 cases
  • , 325,104 controls
]
 — European — UKB —
PSS008207 — — 5,753 individuals — South Asian India (South Asia) UKB —
PSS004496 — —
[
  • 16 cases
  • , 6,481 controls
]
 — African unspecified — UKB —
PSS004497 — —
[
  • 2 cases
  • , 1,702 controls
]
 — East Asian — UKB —
PSS004498 — —
[
  • 149 cases
  • , 24,756 controls
]
 — European non-white British ancestry UKB —
PSS004499 — —
[
  • 11 cases
  • , 7,820 controls
]
 — South Asian — UKB —
PSS004500 — —
[
  • 429 cases
  • , 66,996 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS011364 — — 56,192 individuals — European — UKB —
PSS004506 — —
[
  • 58 cases
  • , 6,439 controls
]
 — African unspecified — UKB —
PSS004507 — —
[
  • 6 cases
  • , 1,698 controls
]
 — East Asian — UKB —
PSS004508 — —
[
  • 671 cases
  • , 24,234 controls
]
 — European non-white British ancestry UKB —
PSS004509 — —
[
  • 130 cases
  • , 7,701 controls
]
 — South Asian — UKB —
PSS004510 — —
[
  • 1,860 cases
  • , 65,565 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS008876 — — 3,652 individuals — African unspecified Nigeria (West Africa) UKB —
PSS007989 — — 1,729 individuals — East Asian China (East Asia) UKB —