Trait: lymphocyte count

Experimental Factor Ontology (EFO) Information
Identifier EFO_0004587
Description A quantification of lymphocytes in blood.
Trait category
Hematological measurement
Synonym lymphocyte counts
Mapped terms 4 mapped terms
  • MeSH:D018655
  • MedDRA:10025251
  • NCIt:C51949
  • SNOMEDCT:74765001
Child trait(s) lymphocyte percentage of leukocytes

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Note: This table shows all PGS for "lymphocyte count" and any child terms of this trait in the EFO hierarchy by default.
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000097
(lymph)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Lymphocyte count lymphocyte count 24,646
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000097/ScoringFiles/PGS000097.txt.gz
PGS000098
(lymph_p)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Lymphocyte percentage of white cells lymphocyte percentage of leukocytes 22,363
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000098/ScoringFiles/PGS000098.txt.gz
PGS000172
(lymph)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Lymphocyte count lymphocyte count 621
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000172/ScoringFiles/PGS000172.txt.gz
PGS000173
(lymph_p)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Lymphocyte percentage of white cells lymphocyte percentage of leukocytes 472
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000173/ScoringFiles/PGS000173.txt.gz
PGS001199
(GBE_INI30120)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Lymphocyte count lymphocyte count 4,212
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001199/ScoringFiles/PGS001199.txt.gz
PGS001414
(GBE_INI30180)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Lymphocyte % lymphocyte percentage of leukocytes 15,143
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001414/ScoringFiles/PGS001414.txt.gz
PGS001965
(portability-PLR_log_lymphocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lymphocyte count lymphocyte count 76,535
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001965/ScoringFiles/PGS001965.txt.gz
PGS001986
(portability-PLR_lymphocyte_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lymphocyte percentage lymphocyte percentage of leukocytes 66,778
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001986/ScoringFiles/PGS001986.txt.gz
PGS002183
(portability-ldpred2_log_lymphocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lymphocyte count lymphocyte count 814,921
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002183/ScoringFiles/PGS002183.txt.gz
PGS002203
(portability-ldpred2_lymphocyte_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lymphocyte percentage lymphocyte percentage of leukocytes 775,312
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002203/ScoringFiles/PGS002203.txt.gz
PGS002338
(blood_LYMPHOCYTE_COUNT.BOLT-LMM)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Lymphocyte count lymphocyte count 1,109,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002338/ScoringFiles/PGS002338.txt.gz
PGS002370
(blood_LYMPHOCYTE_COUNT.BOLT-LMM-BBJ)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Lymphocyte count lymphocyte count 920,935
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002370/ScoringFiles/PGS002370.txt.gz
PGS002410
(blood_LYMPHOCYTE_COUNT.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Lymphocyte count lymphocyte count 14,889
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002410/ScoringFiles/PGS002410.txt.gz
PGS002459
(blood_LYMPHOCYTE_COUNT.P+T.0.001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Lymphocyte count lymphocyte count 36,117
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002459/ScoringFiles/PGS002459.txt.gz
PGS002508
(blood_LYMPHOCYTE_COUNT.P+T.0.01)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Lymphocyte count lymphocyte count 140,957
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002508/ScoringFiles/PGS002508.txt.gz
PGS002557
(blood_LYMPHOCYTE_COUNT.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Lymphocyte count lymphocyte count 5,729
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002557/ScoringFiles/PGS002557.txt.gz
PGS002606
(blood_LYMPHOCYTE_COUNT.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Lymphocyte count lymphocyte count 3,808
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002606/ScoringFiles/PGS002606.txt.gz
PGS002655
(blood_LYMPHOCYTE_COUNT.PolyFun-pred)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Lymphocyte count lymphocyte count 472,203
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002655/ScoringFiles/PGS002655.txt.gz
PGS002704
(blood_LYMPHOCYTE_COUNT.SBayesR)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Lymphocyte count lymphocyte count 983,350
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002704/ScoringFiles/PGS002704.txt.gz
PGS003475
(LDPred2_LYM)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Lymphocyte count lymphocyte count 859,875
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003475/ScoringFiles/PGS003475.txt.gz
PGS003557
(cont-decay-lymphocyte_perc)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Lymphocyte percentage lymphocyte percentage of leukocytes 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003557/ScoringFiles/PGS003557.txt.gz
PGS003936
(INI30120)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Lymphocyte count lymphocyte count 7,291
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003936/ScoringFiles/PGS003936.txt.gz
PGS003941
(INI30180)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Lymphocyte percentage lymphocyte percentage of leukocytes 20,804
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003941/ScoringFiles/PGS003941.txt.gz
PGS004356
(X30120.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Lymphocyte count lymphocyte count 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004356/ScoringFiles/PGS004356.txt.gz
PGS004359
(X30180.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Lymphocyte percentage lymphocyte percentage of leukocytes 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004359/ScoringFiles/PGS004359.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM000226 PGS000097
(lymph)
 PSS000162|
European Ancestry|
81,455 individuals
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Reported Trait: Lymphocyte count — — Pearson correlation coefficent (r): 0.40707 age, sex, 10 PCs of ancestry, lifestyle factors (diet, smoking, alcohol consumption), technical covariates (the time between venepuncture and full blood cell analysis, seasonal effects, centre of sample collection, time dependent drift of equipment, systematic differences in equipment) UKB Testing Set - these samples were held out from Score Development (regression training) but overlap with the samples used for variant selection (GWAS)
PPM000227 PGS000097
(lymph)
 PSS000136|
European Ancestry|
39,191 individuals
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Reported Trait: Lymphocyte count — — Pearson correlation coefficent (r): 0.4055 age, sex, 10 PCs of ancestry, lifestyle factors (diet, smoking, alcohol consumption), technical covariates (the time between venepuncture and full blood cell analysis, seasonal effects, centre of sample collection, time dependent drift of equipment, systematic differences in equipment) —
PPM000228 PGS000098
(lymph_p)
 PSS000163|
European Ancestry|
81,464 individuals
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Reported Trait: Lymphocyte percentage of white cells — — Pearson correlation coefficent (r): 0.33396 age, sex, 10 PCs of ancestry, lifestyle factors (diet, smoking, alcohol consumption), technical covariates (the time between venepuncture and full blood cell analysis, seasonal effects, centre of sample collection, time dependent drift of equipment, systematic differences in equipment) UKB Testing Set - these samples were held out from Score Development (regression training) but overlap with the samples used for variant selection (GWAS)
PPM000229 PGS000098
(lymph_p)
 PSS000137|
European Ancestry|
39,178 individuals
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Reported Trait: Lymphocyte percentage of white cells — — Pearson correlation coefficent (r): 0.3313 age, sex, 10 PCs of ancestry, lifestyle factors (diet, smoking, alcohol consumption), technical covariates (the time between venepuncture and full blood cell analysis, seasonal effects, centre of sample collection, time dependent drift of equipment, systematic differences in equipment) —
PPM000550 PGS000172
(lymph)
 PSS000290|
European Ancestry|
2,314 individuals
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Reported Trait: Lymphocyte count — — R²: 0.03217 sex, age, 10 genetic PCs —
PPM000528 PGS000172
(lymph)
 PSS000291|
European Ancestry|
39,260 individuals
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Reported Trait: Lymphocyte count — — R²: 0.10555 sex, age, 10 genetic PCs —
PPM000529 PGS000173
(lymph_p)
 PSS000291|
European Ancestry|
39,260 individuals
 PGP000078 |
Vuckovic D et al. Cell (2020)
 Reported Trait: Lymphocyte percentage of white cells — — R²: 0.06965 sex, age, 10 genetic PCs —
PPM008616 PGS001199
(GBE_INI30120)
 PSS006968|
European Ancestry|
24,129 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Lymphocyte count — — R²: 0.04047 [0.03568, 0.04526]
Incremental R2 (full-covars): 0.03437
PGS R2 (no covariates): 0.03502 [0.03053, 0.0395]		 age, sex, UKB array type, Genotype PCs —
PPM008614 PGS001199
(GBE_INI30120)
 PSS006966|
African Ancestry|
6,120 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Lymphocyte count — — R²: 0.01509 [0.00921, 0.02097]
Incremental R2 (full-covars): 0.0048
PGS R2 (no covariates): 0.00655 [0.00264, 0.01046]		 age, sex, UKB array type, Genotype PCs —
PPM008615 PGS001199
(GBE_INI30120)
 PSS006967|
East Asian Ancestry|
1,654 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Lymphocyte count — — R²: 0.07751 [0.05317, 0.10185]
Incremental R2 (full-covars): 0.02783
PGS R2 (no covariates): 0.0308 [0.01468, 0.04692]		 age, sex, UKB array type, Genotype PCs —
PPM008617 PGS001199
(GBE_INI30120)
 PSS006969|
South Asian Ancestry|
7,491 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Lymphocyte count — — R²: 0.04041 [0.03187, 0.04896]
Incremental R2 (full-covars): 0.02891
PGS R2 (no covariates): 0.02928 [0.02192, 0.03663]		 age, sex, UKB array type, Genotype PCs —
PPM008618 PGS001199
(GBE_INI30120)
 PSS006970|
European Ancestry|
65,520 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Lymphocyte count — — R²: 0.02566 [0.0233, 0.02801]
Incremental R2 (full-covars): 0.02051
PGS R2 (no covariates): 0.02072 [0.01859, 0.02285]		 age, sex, UKB array type, Genotype PCs —
PPM007054 PGS001414
(GBE_INI30180)
 PSS006995|
European Ancestry|
65,520 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Lymphocyte % — — R²: 0.10838 [0.10395, 0.11281]
Incremental R2 (full-covars): 0.08842
PGS R2 (no covariates): 0.08835 [0.08426, 0.09245]		 age, sex, UKB array type, Genotype PCs —
PPM007050 PGS001414
(GBE_INI30180)
 PSS006991|
African Ancestry|
6,120 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Lymphocyte % — — R²: 0.03982 [0.03051, 0.04913]
Incremental R2 (full-covars): 0.01769
PGS R2 (no covariates): 0.02018 [0.01341, 0.02694]		 age, sex, UKB array type, Genotype PCs —
PPM007051 PGS001414
(GBE_INI30180)
 PSS006992|
East Asian Ancestry|
1,654 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Lymphocyte % — — R²: 0.08102 [0.05624, 0.10581]
Incremental R2 (full-covars): 0.04011
PGS R2 (no covariates): 0.03886 [0.02091, 0.05682]		 age, sex, UKB array type, Genotype PCs —
PPM007052 PGS001414
(GBE_INI30180)
 PSS006993|
European Ancestry|
24,130 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Lymphocyte % — — R²: 0.09934 [0.09229, 0.10639]
Incremental R2 (full-covars): 0.08221
PGS R2 (no covariates): 0.084 [0.0774, 0.09059]		 age, sex, UKB array type, Genotype PCs —
PPM007053 PGS001414
(GBE_INI30180)
 PSS006994|
South Asian Ancestry|
7,491 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Lymphocyte % — — R²: 0.05905 [0.04893, 0.06918]
Incremental R2 (full-covars): 0.05259
PGS R2 (no covariates): 0.05171 [0.04216, 0.06126]		 age, sex, UKB array type, Genotype PCs —
PPM010595 PGS001965
(portability-PLR_log_lymphocyte)
 PSS009454|
European Ancestry|
19,387 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.3636 [0.3514, 0.3758] sex, age, birth date, deprivation index, 16 PCs —
PPM010596 PGS001965
(portability-PLR_log_lymphocyte)
 PSS009228|
European Ancestry|
3,993 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.3456 [0.3179, 0.3727] sex, age, birth date, deprivation index, 16 PCs —
PPM010597 PGS001965
(portability-PLR_log_lymphocyte)
 PSS008782|
European Ancestry|
6,421 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.3335 [0.3115, 0.3551] sex, age, birth date, deprivation index, 16 PCs —
PPM010598 PGS001965
(portability-PLR_log_lymphocyte)
 PSS008556|
Greater Middle Eastern Ancestry|
1,150 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.3153 [0.2618, 0.3669] sex, age, birth date, deprivation index, 16 PCs —
PPM010599 PGS001965
(portability-PLR_log_lymphocyte)
 PSS008334|
South Asian Ancestry|
6,058 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.301 [0.2779, 0.3238] sex, age, birth date, deprivation index, 16 PCs —
PPM010600 PGS001965
(portability-PLR_log_lymphocyte)
 PSS008111|
East Asian Ancestry|
1,761 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.2717 [0.2277, 0.3147] sex, age, birth date, deprivation index, 16 PCs —
PPM010602 PGS001965
(portability-PLR_log_lymphocyte)
 PSS009002|
African Ancestry|
3,699 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.1702 [0.1386, 0.2014] sex, age, birth date, deprivation index, 16 PCs —
PPM010601 PGS001965
(portability-PLR_log_lymphocyte)
 PSS007898|
African Ancestry|
2,337 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.167 [0.1271, 0.2063] sex, age, birth date, deprivation index, 16 PCs —
PPM010763 PGS001986
(portability-PLR_lymphocyte_perc)
 PSS009473|
European Ancestry|
19,383 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.314 [0.3012, 0.3266] sex, age, birth date, deprivation index, 16 PCs —
PPM010764 PGS001986
(portability-PLR_lymphocyte_perc)
 PSS009247|
European Ancestry|
3,992 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.2972 [0.2686, 0.3253] sex, age, birth date, deprivation index, 16 PCs —
PPM010765 PGS001986
(portability-PLR_lymphocyte_perc)
 PSS008801|
European Ancestry|
6,417 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.3022 [0.2798, 0.3243] sex, age, birth date, deprivation index, 16 PCs —
PPM010766 PGS001986
(portability-PLR_lymphocyte_perc)
 PSS008575|
Greater Middle Eastern Ancestry|
1,150 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.2825 [0.228, 0.3353] sex, age, birth date, deprivation index, 16 PCs —
PPM010767 PGS001986
(portability-PLR_lymphocyte_perc)
 PSS008353|
South Asian Ancestry|
6,056 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.2722 [0.2487, 0.2954] sex, age, birth date, deprivation index, 16 PCs —
PPM010768 PGS001986
(portability-PLR_lymphocyte_perc)
 PSS008130|
East Asian Ancestry|
1,761 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.2475 [0.2028, 0.291] sex, age, birth date, deprivation index, 16 PCs —
PPM010769 PGS001986
(portability-PLR_lymphocyte_perc)
 PSS007917|
African Ancestry|
2,337 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.1708 [0.131, 0.21] sex, age, birth date, deprivation index, 16 PCs —
PPM010770 PGS001986
(portability-PLR_lymphocyte_perc)
 PSS009021|
African Ancestry|
3,695 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.1726 [0.1411, 0.2038] sex, age, birth date, deprivation index, 16 PCs —
PPM012311 PGS002183
(portability-ldpred2_log_lymphocyte)
 PSS009454|
European Ancestry|
19,387 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.3574 [0.3451, 0.3697] sex, age, birth date, deprivation index, 16 PCs —
PPM012312 PGS002183
(portability-ldpred2_log_lymphocyte)
 PSS009228|
European Ancestry|
3,993 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.3369 [0.3091, 0.3642] sex, age, birth date, deprivation index, 16 PCs —
PPM012314 PGS002183
(portability-ldpred2_log_lymphocyte)
 PSS008556|
Greater Middle Eastern Ancestry|
1,150 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.2968 [0.2427, 0.3491] sex, age, birth date, deprivation index, 16 PCs —
PPM012315 PGS002183
(portability-ldpred2_log_lymphocyte)
 PSS008334|
South Asian Ancestry|
6,058 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.2945 [0.2713, 0.3173] sex, age, birth date, deprivation index, 16 PCs —
PPM012316 PGS002183
(portability-ldpred2_log_lymphocyte)
 PSS008111|
East Asian Ancestry|
1,761 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.2745 [0.2305, 0.3174] sex, age, birth date, deprivation index, 16 PCs —
PPM012317 PGS002183
(portability-ldpred2_log_lymphocyte)
 PSS007898|
African Ancestry|
2,337 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.1609 [0.121, 0.2003] sex, age, birth date, deprivation index, 16 PCs —
PPM012318 PGS002183
(portability-ldpred2_log_lymphocyte)
 PSS009002|
African Ancestry|
3,699 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.1618 [0.1302, 0.1931] sex, age, birth date, deprivation index, 16 PCs —
PPM012313 PGS002183
(portability-ldpred2_log_lymphocyte)
 PSS008782|
European Ancestry|
6,421 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte count — — Partial Correlation (partial-r): 0.3319 [0.31, 0.3536] sex, age, birth date, deprivation index, 16 PCs —
PPM012471 PGS002203
(portability-ldpred2_lymphocyte_perc)
 PSS009473|
European Ancestry|
19,383 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.3116 [0.2989, 0.3243] sex, age, birth date, deprivation index, 16 PCs —
PPM012472 PGS002203
(portability-ldpred2_lymphocyte_perc)
 PSS009247|
European Ancestry|
3,992 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.2932 [0.2645, 0.3213] sex, age, birth date, deprivation index, 16 PCs —
PPM012473 PGS002203
(portability-ldpred2_lymphocyte_perc)
 PSS008801|
European Ancestry|
6,417 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.2976 [0.2751, 0.3198] sex, age, birth date, deprivation index, 16 PCs —
PPM012474 PGS002203
(portability-ldpred2_lymphocyte_perc)
 PSS008575|
Greater Middle Eastern Ancestry|
1,150 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.2842 [0.2297, 0.3369] sex, age, birth date, deprivation index, 16 PCs —
PPM012475 PGS002203
(portability-ldpred2_lymphocyte_perc)
 PSS008353|
South Asian Ancestry|
6,056 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.2664 [0.2428, 0.2897] sex, age, birth date, deprivation index, 16 PCs —
PPM012476 PGS002203
(portability-ldpred2_lymphocyte_perc)
 PSS008130|
East Asian Ancestry|
1,761 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.2567 [0.2122, 0.3] sex, age, birth date, deprivation index, 16 PCs —
PPM012477 PGS002203
(portability-ldpred2_lymphocyte_perc)
 PSS007917|
African Ancestry|
2,337 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.1725 [0.1327, 0.2117] sex, age, birth date, deprivation index, 16 PCs —
PPM012478 PGS002203
(portability-ldpred2_lymphocyte_perc)
 PSS009021|
African Ancestry|
3,695 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Lymphocyte percentage — — Partial Correlation (partial-r): 0.164 [0.1324, 0.1953] sex, age, birth date, deprivation index, 16 PCs —
PPM013103 PGS002338
(blood_LYMPHOCYTE_COUNT.BOLT-LMM)
 PSS009795|
African Ancestry|
6,135 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0305 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013152 PGS002338
(blood_LYMPHOCYTE_COUNT.BOLT-LMM)
 PSS009796|
East Asian Ancestry|
895 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0585 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013201 PGS002338
(blood_LYMPHOCYTE_COUNT.BOLT-LMM)
 PSS009797|
European Ancestry|
41,973 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.1307 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013250 PGS002338
(blood_LYMPHOCYTE_COUNT.BOLT-LMM)
 PSS009798|
South Asian Ancestry|
7,737 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0755 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013351 PGS002370
(blood_LYMPHOCYTE_COUNT.BOLT-LMM-BBJ)
 PSS009798|
South Asian Ancestry|
7,737 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0045 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013282 PGS002370
(blood_LYMPHOCYTE_COUNT.BOLT-LMM-BBJ)
 PSS009795|
African Ancestry|
6,135 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0008 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013328 PGS002370
(blood_LYMPHOCYTE_COUNT.BOLT-LMM-BBJ)
 PSS009797|
European Ancestry|
41,973 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0034 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013305 PGS002370
(blood_LYMPHOCYTE_COUNT.BOLT-LMM-BBJ)
 PSS009796|
East Asian Ancestry|
895 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0363 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013391 PGS002410
(blood_LYMPHOCYTE_COUNT.P+T.0.0001)
 PSS009795|
African Ancestry|
6,135 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0004 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013440 PGS002410
(blood_LYMPHOCYTE_COUNT.P+T.0.0001)
 PSS009796|
East Asian Ancestry|
895 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0566 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013489 PGS002410
(blood_LYMPHOCYTE_COUNT.P+T.0.0001)
 PSS009797|
European Ancestry|
41,973 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0706 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013538 PGS002410
(blood_LYMPHOCYTE_COUNT.P+T.0.0001)
 PSS009798|
South Asian Ancestry|
7,737 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0387 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013587 PGS002459
(blood_LYMPHOCYTE_COUNT.P+T.0.001)
 PSS009795|
African Ancestry|
6,135 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0003 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013636 PGS002459
(blood_LYMPHOCYTE_COUNT.P+T.0.001)
 PSS009796|
East Asian Ancestry|
895 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0358 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013685 PGS002459
(blood_LYMPHOCYTE_COUNT.P+T.0.001)
 PSS009797|
European Ancestry|
41,973 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.058 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013734 PGS002459
(blood_LYMPHOCYTE_COUNT.P+T.0.001)
 PSS009798|
South Asian Ancestry|
7,737 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0294 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013881 PGS002508
(blood_LYMPHOCYTE_COUNT.P+T.0.01)
 PSS009797|
European Ancestry|
41,973 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0456 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013783 PGS002508
(blood_LYMPHOCYTE_COUNT.P+T.0.01)
 PSS009795|
African Ancestry|
6,135 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013832 PGS002508
(blood_LYMPHOCYTE_COUNT.P+T.0.01)
 PSS009796|
East Asian Ancestry|
895 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0123 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013930 PGS002508
(blood_LYMPHOCYTE_COUNT.P+T.0.01)
 PSS009798|
South Asian Ancestry|
7,737 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0138 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM013979 PGS002557
(blood_LYMPHOCYTE_COUNT.P+T.1e-06)
 PSS009795|
African Ancestry|
6,135 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0087 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM014028 PGS002557
(blood_LYMPHOCYTE_COUNT.P+T.1e-06)
 PSS009796|
East Asian Ancestry|
895 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.057 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM014077 PGS002557
(blood_LYMPHOCYTE_COUNT.P+T.1e-06)
 PSS009797|
European Ancestry|
41,973 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0561 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM014126 PGS002557
(blood_LYMPHOCYTE_COUNT.P+T.1e-06)
 PSS009798|
South Asian Ancestry|
7,737 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0302 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM014175 PGS002606
(blood_LYMPHOCYTE_COUNT.P+T.5e-08)
 PSS009795|
African Ancestry|
6,135 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0085 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM014224 PGS002606
(blood_LYMPHOCYTE_COUNT.P+T.5e-08)
 PSS009796|
East Asian Ancestry|
895 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0542 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM014273 PGS002606
(blood_LYMPHOCYTE_COUNT.P+T.5e-08)
 PSS009797|
European Ancestry|
41,973 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0498 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM014322 PGS002606
(blood_LYMPHOCYTE_COUNT.P+T.5e-08)
 PSS009798|
South Asian Ancestry|
7,737 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0265 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM014371 PGS002655
(blood_LYMPHOCYTE_COUNT.PolyFun-pred)
 PSS009795|
African Ancestry|
6,135 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.0339 age, sex, age*sex, assessment center, genotyping array, 10 PCs See blood_LYMPHOCYTE_COUNT.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights
PPM014420 PGS002655
(blood_LYMPHOCYTE_COUNT.PolyFun-pred)
 PSS009796|
East Asian Ancestry|
895 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.0735 age, sex, age*sex, assessment center, genotyping array, 10 PCs See blood_LYMPHOCYTE_COUNT.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights
PPM014469 PGS002655
(blood_LYMPHOCYTE_COUNT.PolyFun-pred)
 PSS009797|
European Ancestry|
41,973 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.1393 age, sex, age*sex, assessment center, genotyping array, 10 PCs See blood_LYMPHOCYTE_COUNT.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights
PPM014518 PGS002655
(blood_LYMPHOCYTE_COUNT.PolyFun-pred)
 PSS009798|
South Asian Ancestry|
7,737 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.0834 age, sex, age*sex, assessment center, genotyping array, 10 PCs See blood_LYMPHOCYTE_COUNT.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights
PPM014616 PGS002704
(blood_LYMPHOCYTE_COUNT.SBayesR)
 PSS009796|
East Asian Ancestry|
895 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0673 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM014567 PGS002704
(blood_LYMPHOCYTE_COUNT.SBayesR)
 PSS009795|
African Ancestry|
6,135 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0268 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM014665 PGS002704
(blood_LYMPHOCYTE_COUNT.SBayesR)
 PSS009797|
European Ancestry|
41,973 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.1222 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM014714 PGS002704
(blood_LYMPHOCYTE_COUNT.SBayesR)
 PSS009798|
South Asian Ancestry|
7,737 individuals
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Reported Trait: Lymphocyte Count — — Incremental R2 (full model vs. covariates alone): 0.0722 age, sex, age*sex, assessment center, genotyping array, 10 PCs —
PPM017285 PGS003475
(LDPred2_LYM)
 PSS010185|
Hispanic or Latin American Ancestry|
1,115 individuals
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Reported Trait: Respiratory event index β: 0.009 (0.01) — — Age, sex, center, 5 genetic PCs, Hispanic/Latino background, BMI —
PPM017308 PGS003475
(LDPred2_LYM)
 PSS010185|
Hispanic or Latin American Ancestry|
1,115 individuals
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Reported Trait: Obstructive sleep apnea β: 0.007 (0.024) — — Age, sex, center, 5 genetic PCs, Hispanic/Latino background, BMI —
PPM017905 PGS003557
(cont-decay-lymphocyte_perc)
 PSS010503|
South Asian Ancestry|
6,004 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Lymphocyte percentage — — partial-R2: 0.07 sex, age, deprivation index, PC1-16 —
PPM017485 PGS003557
(cont-decay-lymphocyte_perc)
 PSS010923|
European Ancestry|
19,370 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Lymphocyte percentage — — partial-R2: 0.1 sex, age, deprivation index, PC1-16 —
PPM017569 PGS003557
(cont-decay-lymphocyte_perc)
 PSS010839|
European Ancestry|
3,981 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Lymphocyte percentage — — partial-R2: 0.08 sex, age, deprivation index, PC1-16 —
PPM017737 PGS003557
(cont-decay-lymphocyte_perc)
 PSS010587|
Greater Middle Eastern Ancestry|
1,120 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Lymphocyte percentage — — partial-R2: 0.08 sex, age, deprivation index, PC1-16 —
PPM017821 PGS003557
(cont-decay-lymphocyte_perc)
 PSS010251|
European Ancestry|
2,258 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Lymphocyte percentage — — partial-R2: 0.09 sex, age, deprivation index, PC1-16 —
PPM017989 PGS003557
(cont-decay-lymphocyte_perc)
 PSS010419|
East Asian Ancestry|
1,749 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Lymphocyte percentage — — partial-R2: 0.07 sex, age, deprivation index, PC1-16 —
PPM018073 PGS003557
(cont-decay-lymphocyte_perc)
 PSS010335|
African Ancestry|
2,324 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Lymphocyte percentage — — partial-R2: 0.03 sex, age, deprivation index, PC1-16 —
PPM018157 PGS003557
(cont-decay-lymphocyte_perc)
 PSS010755|
African Ancestry|
3,666 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Lymphocyte percentage — — partial-R2: 0.02 sex, age, deprivation index, PC1-16 —
PPM017653 PGS003557
(cont-decay-lymphocyte_perc)
 PSS010671|
European Ancestry|
6,258 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Lymphocyte percentage — — partial-R2: 0.09 sex, age, deprivation index, PC1-16 —
PPM018999 PGS003936
(INI30120)
 PSS011139|
European Ancestry|
65,814 individuals
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Reported Trait: Lymphocyte count — — R²: 0.02749 [0.02507, 0.02992]
PGS R2 (no covariates): 0.02217 [0.01997, 0.02436]
Incremental R2 (full-covars): 0.02189		 age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) —
PPM019000 PGS003936
(INI30120)
 PSS011110|
European Ancestry|
2,810 individuals
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Reported Trait: Lymphocyte count — — R²: 0.03382 [0.02089, 0.04675]
PGS R2 (no covariates): 0.02699 [0.01535, 0.03862]
Incremental R2 (full-covars): 0.02644		 age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) —
PPM019001 PGS003936
(INI30120)
 PSS011112|
South Asian Ancestry|
1,428 individuals
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Reported Trait: Lymphocyte count — — R²: 0.05901 [0.03583, 0.08219]
PGS R2 (no covariates): 0.04232 [0.02234, 0.0623]
Incremental R2 (full-covars): 0.03929		 age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) —
PPM019002 PGS003936
(INI30120)
 PSS011154|
African Ancestry|
1,154 individuals
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Reported Trait: Lymphocyte count — — R²: 0.01861 [0.00358, 0.03363]
PGS R2 (no covariates): 0.00551 [-0.00278, 0.01379]
Incremental R2 (full-covars): -0.00495		 age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) —
PPM019003 PGS003936
(INI30120)
 PSS011168|
Multi-ancestry (excluding European)|
7,732 individuals
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Reported Trait: Lymphocyte count — — R²: 0.04696 [0.03792, 0.05601]
PGS R2 (no covariates): 0.02897 [0.02173, 0.0362]
Incremental R2 (full-covars): 0.02614		 age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) —
PPM019024 PGS003941
(INI30180)
 PSS011139|
European Ancestry|
65,814 individuals
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Reported Trait: Lymphocyte percentage — — R²: 0.12323 [0.1186, 0.12787]
PGS R2 (no covariates): 0.09003 [0.08592, 0.09414]
Incremental R2 (full-covars): 0.09003		 age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) —
PPM019025 PGS003941
(INI30180)
 PSS011110|
European Ancestry|
2,810 individuals
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Reported Trait: Lymphocyte percentage — — R²: 0.11201 [0.09038, 0.13364]
PGS R2 (no covariates): 0.08186 [0.06274, 0.10098]
Incremental R2 (full-covars): 0.08335		 age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) —
PPM019026 PGS003941
(INI30180)
 PSS011112|
South Asian Ancestry|
1,428 individuals
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Reported Trait: Lymphocyte percentage — — R²: 0.07411 [0.04855, 0.09967]
PGS R2 (no covariates): 0.05351 [0.03131, 0.07571]
Incremental R2 (full-covars): 0.05293		 age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) —
PPM019027 PGS003941
(INI30180)
 PSS011154|
African Ancestry|
1,154 individuals
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Reported Trait: Lymphocyte percentage — — R²: 0.06881 [0.0414, 0.09623]
PGS R2 (no covariates): 0.0468 [0.02366, 0.06995]
Incremental R2 (full-covars): 0.04285		 age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) —
PPM019028 PGS003941
(INI30180)
 PSS011168|
Multi-ancestry (excluding European)|
7,732 individuals
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Reported Trait: Lymphocyte percentage — — R²: 0.15346 [0.13894, 0.16798]
PGS R2 (no covariates): 0.11132 [0.09834, 0.12431]
Incremental R2 (full-covars): 0.07958		 age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18) —
PPM020471 PGS004356
(X30120.score)
 PSS011364|
European Ancestry|
56,192 individuals
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Reported Trait: Lymphocyte count — — PGS R2 (no covariates): 0.25007 — —
PPM020474 PGS004359
(X30180.score)
 PSS011364|
European Ancestry|
56,192 individuals
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Reported Trait: Lymphocyte percentage — — PGS R2 (no covariates): 0.22005 — —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008782 — — 6,421 individuals — European Italy (South Europe) UKB —
PSS010923 — — 19,370 individuals,
46.0 % Male samples
 Mean = 56.9 years
Sd = 7.9 years		 European white British UKB —
PSS011154 — — 1,154 individuals — African unspecified — UKB —
PSS010671 — — 6,258 individuals,
45.0 % Male samples
 Mean = 54.5 years
Sd = 8.4 years		 European Italian UKB —
PSS006991 — — 6,120 individuals — African unspecified — UKB —
PSS006992 — — 1,654 individuals — East Asian — UKB —
PSS006993 — — 24,130 individuals — European non-white British ancestry UKB —
PSS006994 — — 7,491 individuals — South Asian — UKB —
PSS006995 — — 65,520 individuals — European white British ancestry UKB Testing cohort (heldout set)
PSS007898 — — 2,337 individuals — African American or Afro-Caribbean Carribean UKB —
PSS008130 — — 1,761 individuals — East Asian China (East Asia) UKB —
PSS010419 — — 1,749 individuals,
33.0 % Male samples
 Mean = 52.5 years
Sd = 7.8 years		 East Asian Chinese UKB —
PSS011168 — — 7,732 individuals — East Asian, Other admixed ancestry East Asian, Other admixed ancestry UKB —
PSS008801 — — 6,417 individuals — European Italy (South Europe) UKB —
PSS000290 — — 2,314 individuals — European
(French Canadian)		 — CARTaGENE —
PSS000291 — — 39,260 individuals — European — INTERVAL —
PSS008556 — — 1,150 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS007917 — — 2,337 individuals — African American or Afro-Caribbean Carribean UKB —
PSS009454 — — 19,387 individuals — European UK (+ Ireland) UKB —
PSS010185 — — 1,115 individuals,
41.1 % Male samples
 Mean = 46.18 years Hispanic or Latin American — HCHS, SOL —
PSS009795 — — 6,135 individuals — African unspecified — UKB —
PSS009796 — — 895 individuals — East Asian — UKB —
PSS009797 — — 41,973 individuals — European Non-British European UKB —
PSS009798 — — 7,737 individuals — South Asian — UKB —
PSS008575 — — 1,150 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS010839 — — 3,981 individuals,
38.0 % Male samples
 Mean = 54.3 years
Sd = 7.5 years		 European Polish UKB —
PSS009473 — — 19,383 individuals — European UK (+ Ireland) UKB —
PSS010587 — — 1,120 individuals,
59.0 % Male samples
 Mean = 52.0 years
Sd = 8.0 years		 Greater Middle Eastern (Middle Eastern, North African or Persian) Iranian UKB —
PSS010335 — — 2,324 individuals,
36.0 % Male samples
 Mean = 52.4 years
Sd = 8.0 years		 African American or Afro-Caribbean Caribbean UKB —
PSS000136 — — 39,191 individuals,
50.0 % Male samples
 Mean = 43.82 years
Range = [18.0, 76.4] years		 European — INTERVAL —
PSS000137 — — 39,178 individuals,
50.0 % Male samples
 Mean = 43.82 years
Range = [18.0, 76.4] years		 European — INTERVAL —
PSS009228 — — 3,993 individuals — European Poland (NE Europe) UKB —
PSS008334 — — 6,058 individuals — South Asian India (South Asia) UKB —
PSS009247 — — 3,992 individuals — European Poland (NE Europe) UKB —
PSS011364 — — 56,192 individuals — European — UKB —
PSS008353 — — 6,056 individuals — South Asian India (South Asia) UKB —
PSS000162 — — 81,455 individuals,
45.0 % Male samples
 Mean = 57.23 years
Range = [40.05, 71.07] years		 European — UKB —
PSS000163 — — 81,464 individuals,
46.0 % Male samples
 Mean = 57.22 years
Range = [40.17, 71.1] years		 European — UKB —
PSS011110 — — 2,810 individuals — European
(non-white British ancestry)		 — UKB —
PSS011112 — — 1,428 individuals — South Asian — UKB —
PSS010755 — — 3,666 individuals,
47.0 % Male samples
 Mean = 51.9 years
Sd = 8.1 years		 African unspecified Nigerian UKB —
PSS009002 — — 3,699 individuals — African unspecified Nigeria (West Africa) UKB —
PSS010503 — — 6,004 individuals,
55.0 % Male samples
 Mean = 53.3 years
Sd = 8.4 years		 South Asian Indian UKB —
PSS008111 — — 1,761 individuals — East Asian China (East Asia) UKB —
PSS010251 — — 2,258 individuals,
45.0 % Male samples
 Mean = 58.0 years
Sd = 7.1 years		 European Ashkenazi UKB —
PSS009021 — — 3,695 individuals — African unspecified Nigeria (West Africa) UKB —
PSS006966 — — 6,120 individuals — African unspecified — UKB —
PSS006967 — — 1,654 individuals — East Asian — UKB —
PSS006968 — — 24,129 individuals — European non-white British ancestry UKB —
PSS006969 — — 7,491 individuals — South Asian — UKB —
PSS006970 — — 65,520 individuals — European white British ancestry UKB Testing cohort (heldout set)
PSS011139 — — 65,814 individuals — European
(white British ancestry)		 — UKB —