Trait: ventricular rate measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0007928
Description quantification in an electrocardiogram of the number of QRS complexes per minute
Trait category
Cardiovascular measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001981
(portability-PLR_log_ventricular_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ventricular rate ventricular rate measurement 6,324
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001981/ScoringFiles/PGS001981.txt.gz
PGS002199
(portability-ldpred2_log_ventricular_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ventricular rate ventricular rate measurement 705,680
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002199/ScoringFiles/PGS002199.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010723 PGS001981
(portability-PLR_log_ventricular_rate)
 PSS009469|
European Ancestry|
1,711 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): 0.1331 [0.086, 0.1796] sex, age, birth date, deprivation index, 16 PCs —
PPM010724 PGS001981
(portability-PLR_log_ventricular_rate)
 PSS009243|
European Ancestry|
329 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): 0.0953 [-0.0164, 0.2047] sex, age, birth date, deprivation index, 16 PCs —
PPM010726 PGS001981
(portability-PLR_log_ventricular_rate)
 PSS008571|
Greater Middle Eastern Ancestry|
50 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): -0.2266 [-0.5425, 0.1456] sex, age, birth date, deprivation index, 16 PCs —
PPM010727 PGS001981
(portability-PLR_log_ventricular_rate)
 PSS008349|
South Asian Ancestry|
307 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): 0.025 [-0.0911, 0.1404] sex, age, birth date, deprivation index, 16 PCs —
PPM010728 PGS001981
(portability-PLR_log_ventricular_rate)
 PSS008126|
East Asian Ancestry|
137 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): -0.0998 [-0.2763, 0.0832] sex, age, birth date, deprivation index, 16 PCs —
PPM010729 PGS001981
(portability-PLR_log_ventricular_rate)
 PSS007913|
African Ancestry|
78 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): 0.0409 [-0.2198, 0.296] sex, age, birth date, deprivation index, 16 PCs —
PPM010730 PGS001981
(portability-PLR_log_ventricular_rate)
 PSS009017|
African Ancestry|
140 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): -0.1197 [-0.2927, 0.0608] sex, age, birth date, deprivation index, 16 PCs —
PPM010725 PGS001981
(portability-PLR_log_ventricular_rate)
 PSS008797|
European Ancestry|
490 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): 0.1205 [0.0304, 0.2087] sex, age, birth date, deprivation index, 16 PCs —
PPM012439 PGS002199
(portability-ldpred2_log_ventricular_rate)
 PSS009469|
European Ancestry|
1,711 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): 0.1563 [0.1094, 0.2024] sex, age, birth date, deprivation index, 16 PCs —
PPM012440 PGS002199
(portability-ldpred2_log_ventricular_rate)
 PSS009243|
European Ancestry|
329 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): 0.1975 [0.0879, 0.3024] sex, age, birth date, deprivation index, 16 PCs —
PPM012441 PGS002199
(portability-ldpred2_log_ventricular_rate)
 PSS008797|
European Ancestry|
490 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): 0.1785 [0.0894, 0.2646] sex, age, birth date, deprivation index, 16 PCs —
PPM012442 PGS002199
(portability-ldpred2_log_ventricular_rate)
 PSS008571|
Greater Middle Eastern Ancestry|
50 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): -0.2917 [-0.59, 0.0766] sex, age, birth date, deprivation index, 16 PCs —
PPM012443 PGS002199
(portability-ldpred2_log_ventricular_rate)
 PSS008349|
South Asian Ancestry|
307 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): 0.066 [-0.0501, 0.1804] sex, age, birth date, deprivation index, 16 PCs —
PPM012445 PGS002199
(portability-ldpred2_log_ventricular_rate)
 PSS007913|
African Ancestry|
78 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): 0.0201 [-0.2394, 0.277] sex, age, birth date, deprivation index, 16 PCs —
PPM012446 PGS002199
(portability-ldpred2_log_ventricular_rate)
 PSS009017|
African Ancestry|
140 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): -0.0905 [-0.2655, 0.0902] sex, age, birth date, deprivation index, 16 PCs —
PPM012444 PGS002199
(portability-ldpred2_log_ventricular_rate)
 PSS008126|
East Asian Ancestry|
137 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Ventricular rate — — Partial Correlation (partial-r): 0.0478 [-0.1349, 0.2274] sex, age, birth date, deprivation index, 16 PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008349 — — 307 individuals — South Asian India (South Asia) UKB —
PSS007913 — — 78 individuals — African American or Afro-Caribbean Carribean UKB —
PSS008797 — — 490 individuals — European Italy (South Europe) UKB —
PSS009017 — — 140 individuals — African unspecified Nigeria (West Africa) UKB —
PSS009243 — — 329 individuals — European Poland (NE Europe) UKB —
PSS008571 — — 50 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS009469 — — 1,711 individuals — European UK (+ Ireland) UKB —
PSS008126 — — 137 individuals — East Asian China (East Asia) UKB —