Trait: snoring measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0008341
Description quantification of some aspect of snoring such as frequency or severity
Trait category
Other measurement
Mapped term PMID:28604731

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001054
(GBE_BIN1210)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Snoring snoring measurement 7,407
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001054/ScoringFiles/PGS001054.txt.gz
PGS002006
(portability-PLR_snoring)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Snoring snoring measurement 33,917
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002006/ScoringFiles/PGS002006.txt.gz
PGS002225
(portability-ldpred2_snoring)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Snoring snoring measurement 913,306
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002225/ScoringFiles/PGS002225.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM008028 PGS001054
(GBE_BIN1210)
 PSS003632|
African Ancestry|
5,724 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Snoring — AUROC: 0.56752 [0.55195, 0.58308] R²: 0.01836
Incremental AUROC (full-covars): 0.00418
PGS R2 (no covariates): 0.00323
PGS AUROC (no covariates): 0.52957 [0.51394, 0.54521]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008029 PGS001054
(GBE_BIN1210)
 PSS003633|
East Asian Ancestry|
1,487 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Snoring — AUROC: 0.67171 [0.64335, 0.70007] R²: 0.11762
Incremental AUROC (full-covars): 0.01614
PGS R2 (no covariates): 0.00954
PGS AUROC (no covariates): 0.55576 [0.52576, 0.58577]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008030 PGS001054
(GBE_BIN1210)
 PSS003634|
European Ancestry|
22,809 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Snoring — AUROC: 0.6348 [0.62735, 0.64225] R²: 0.06823
Incremental AUROC (full-covars): 0.01869
PGS R2 (no covariates): 0.01264
PGS AUROC (no covariates): 0.55683 [0.5491, 0.56456]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008031 PGS001054
(GBE_BIN1210)
 PSS003635|
South Asian Ancestry|
6,976 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Snoring — AUROC: 0.60905 [0.59574, 0.62235] R²: 0.04773
Incremental AUROC (full-covars): 0.0076
PGS R2 (no covariates): 0.00635
PGS AUROC (no covariates): 0.54076 [0.52704, 0.55447]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM008032 PGS001054
(GBE_BIN1210)
 PSS003636|
European Ancestry|
63,239 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Snoring — AUROC: 0.6302 [0.62577, 0.63463] R²: 0.06538
Incremental AUROC (full-covars): 0.01667
PGS R2 (no covariates): 0.01001
PGS AUROC (no covariates): 0.54987 [0.54527, 0.55446]		 age, sex, UKB array type, Genotype PCs Full Model & PGS R2 is estimated using Nagelkerke's method
PPM010922 PGS002006
(portability-PLR_snoring)
 PSS009491|
European Ancestry|
18,616 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.1113 [0.0971, 0.1255] sex, age, birth date, deprivation index, 16 PCs —
PPM010923 PGS002006
(portability-PLR_snoring)
 PSS009265|
European Ancestry|
3,654 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.1078 [0.0755, 0.1398] sex, age, birth date, deprivation index, 16 PCs —
PPM010924 PGS002006
(portability-PLR_snoring)
 PSS008819|
European Ancestry|
6,027 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.0992 [0.0741, 0.1242] sex, age, birth date, deprivation index, 16 PCs —
PPM010925 PGS002006
(portability-PLR_snoring)
 PSS008593|
Greater Middle Eastern Ancestry|
1,011 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.0834 [0.0212, 0.1449] sex, age, birth date, deprivation index, 16 PCs —
PPM010927 PGS002006
(portability-PLR_snoring)
 PSS008147|
East Asian Ancestry|
1,576 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.0748 [0.0252, 0.1241] sex, age, birth date, deprivation index, 16 PCs —
PPM010929 PGS002006
(portability-PLR_snoring)
 PSS009039|
African Ancestry|
3,448 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.0557 [0.0223, 0.089] sex, age, birth date, deprivation index, 16 PCs —
PPM010926 PGS002006
(portability-PLR_snoring)
 PSS008371|
South Asian Ancestry|
5,655 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.0816 [0.0556, 0.1075] sex, age, birth date, deprivation index, 16 PCs —
PPM010928 PGS002006
(portability-PLR_snoring)
 PSS007935|
African Ancestry|
2,178 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.07 [0.0279, 0.1119] sex, age, birth date, deprivation index, 16 PCs —
PPM012646 PGS002225
(portability-ldpred2_snoring)
 PSS009491|
European Ancestry|
18,616 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.1313 [0.1171, 0.1454] sex, age, birth date, deprivation index, 16 PCs —
PPM012647 PGS002225
(portability-ldpred2_snoring)
 PSS009265|
European Ancestry|
3,654 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.1156 [0.0834, 0.1476] sex, age, birth date, deprivation index, 16 PCs —
PPM012648 PGS002225
(portability-ldpred2_snoring)
 PSS008819|
European Ancestry|
6,027 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.1151 [0.0901, 0.14] sex, age, birth date, deprivation index, 16 PCs —
PPM012649 PGS002225
(portability-ldpred2_snoring)
 PSS008593|
Greater Middle Eastern Ancestry|
1,011 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.0971 [0.0351, 0.1584] sex, age, birth date, deprivation index, 16 PCs —
PPM012650 PGS002225
(portability-ldpred2_snoring)
 PSS008371|
South Asian Ancestry|
5,655 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.0904 [0.0644, 0.1162] sex, age, birth date, deprivation index, 16 PCs —
PPM012651 PGS002225
(portability-ldpred2_snoring)
 PSS008147|
East Asian Ancestry|
1,576 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.0901 [0.0406, 0.1392] sex, age, birth date, deprivation index, 16 PCs —
PPM012652 PGS002225
(portability-ldpred2_snoring)
 PSS007935|
African Ancestry|
2,178 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.0722 [0.0301, 0.114] sex, age, birth date, deprivation index, 16 PCs —
PPM012653 PGS002225
(portability-ldpred2_snoring)
 PSS009039|
African Ancestry|
3,448 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Snoring — — Partial Correlation (partial-r): 0.0754 [0.042, 0.1086] sex, age, birth date, deprivation index, 16 PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS009039 — — 3,448 individuals — African unspecified Nigeria (West Africa) UKB —
PSS009265 — — 3,654 individuals — European Poland (NE Europe) UKB —
PSS008593 — — 1,011 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS009491 — — 18,616 individuals — European UK (+ Ireland) UKB —
PSS008819 — — 6,027 individuals — European Italy (South Europe) UKB —
PSS008147 — — 1,576 individuals — East Asian China (East Asia) UKB —
PSS008371 — — 5,655 individuals — South Asian India (South Asia) UKB —
PSS003632 — —
[
  • 2,011 cases
  • , 3,713 controls
]
 — African unspecified — UKB —
PSS003633 — —
[
  • 557 cases
  • , 930 controls
]
 — East Asian — UKB —
PSS003634 — —
[
  • 8,244 cases
  • , 14,565 controls
]
 — European non-white British ancestry UKB —
PSS003635 — —
[
  • 2,920 cases
  • , 4,056 controls
]
 — South Asian — UKB —
PSS003636 — —
[
  • 24,281 cases
  • , 38,958 controls
]
 — European white British ancestry UKB Testing cohort (heldout set)
PSS007935 — — 2,178 individuals — African American or Afro-Caribbean Carribean UKB —