Trait: lifestyle measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0010724
Description Quantification of some aspect of a subject's lifestyle.
Trait category
Other measurement
Mapped term PMID:32317632

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000984
(GBE_INI2237)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Frequency of playing computer games lifestyle measurement 5,774
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000984/ScoringFiles/PGS000984.txt.gz
PGS001923
(portability-PLR_geek_time)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Time spent watching television (TV) or using computer lifestyle measurement 50,583
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001923/ScoringFiles/PGS001923.txt.gz
PGS001999
(portability-PLR_play_computer)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Plays computer games lifestyle measurement 50,215
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001999/ScoringFiles/PGS001999.txt.gz
PGS002139
(portability-ldpred2_geek_time)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Time spent watching television (TV) or using computer lifestyle measurement 956,532
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002139/ScoringFiles/PGS002139.txt.gz
PGS002217
(portability-ldpred2_play_computer)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Plays computer games lifestyle measurement 938,047
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002217/ScoringFiles/PGS002217.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007701 PGS000984
(GBE_INI2237)
 PSS004984|
South Asian Ancestry|
7,543 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Freq. of playing computer games — — R²: 0.0123 [0.00745, 0.01715]
Incremental R2 (full-covars): -0.00229
PGS R2 (no covariates): 0.00109 [-0.00037, 0.00254]		 age, sex, UKB array type, Genotype PCs —
PPM007698 PGS000984
(GBE_INI2237)
 PSS004981|
African Ancestry|
6,346 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Freq. of playing computer games — — R²: 0.03251 [0.02403, 0.04099]
Incremental R2 (full-covars): -9e-05
PGS R2 (no covariates): 0.00153 [-0.00037, 0.00342]		 age, sex, UKB array type, Genotype PCs —
PPM007699 PGS000984
(GBE_INI2237)
 PSS004982|
East Asian Ancestry|
1,654 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Freq. of playing computer games — — R²: 0.02361 [0.00939, 0.03782]
Incremental R2 (full-covars): 0.0032
PGS R2 (no covariates): 0.00374 [-0.00203, 0.00952]		 age, sex, UKB array type, Genotype PCs —
PPM007700 PGS000984
(GBE_INI2237)
 PSS004983|
European Ancestry|
24,878 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Freq. of playing computer games — — R²: 0.01946 [0.01606, 0.02285]
Incremental R2 (full-covars): 0.00925
PGS R2 (no covariates): 0.00972 [0.00729, 0.01214]		 age, sex, UKB array type, Genotype PCs —
PPM007702 PGS000984
(GBE_INI2237)
 PSS004985|
European Ancestry|
67,390 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Freq. of playing computer games — — R²: 0.01672 [0.0148, 0.01863]
Incremental R2 (full-covars): 0.01068
PGS R2 (no covariates): 0.01089 [0.00933, 0.01245]		 age, sex, UKB array type, Genotype PCs —
PPM010259 PGS001923
(portability-PLR_geek_time)
 PSS009409|
European Ancestry|
19,674 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.1722 [0.1586, 0.1857] sex, age, birth date, deprivation index, 16 PCs —
PPM010260 PGS001923
(portability-PLR_geek_time)
 PSS009183|
European Ancestry|
4,027 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.1303 [0.0997, 0.1606] sex, age, birth date, deprivation index, 16 PCs —
PPM010261 PGS001923
(portability-PLR_geek_time)
 PSS008737|
European Ancestry|
6,466 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.1428 [0.1188, 0.1667] sex, age, birth date, deprivation index, 16 PCs —
PPM010262 PGS001923
(portability-PLR_geek_time)
 PSS008511|
Greater Middle Eastern Ancestry|
1,099 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.0807 [0.0211, 0.1397] sex, age, birth date, deprivation index, 16 PCs —
PPM010263 PGS001923
(portability-PLR_geek_time)
 PSS008289|
South Asian Ancestry|
5,720 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.0818 [0.0559, 0.1075] sex, age, birth date, deprivation index, 16 PCs —
PPM010264 PGS001923
(portability-PLR_geek_time)
 PSS008066|
East Asian Ancestry|
1,721 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.0552 [0.0077, 0.1025] sex, age, birth date, deprivation index, 16 PCs —
PPM010265 PGS001923
(portability-PLR_geek_time)
 PSS007853|
African Ancestry|
2,285 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.0281 [-0.0131, 0.0692] sex, age, birth date, deprivation index, 16 PCs —
PPM010266 PGS001923
(portability-PLR_geek_time)
 PSS008957|
African Ancestry|
3,550 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.0127 [-0.0203, 0.0457] sex, age, birth date, deprivation index, 16 PCs —
PPM010867 PGS001999
(portability-PLR_play_computer)
 PSS009483|
European Ancestry|
19,980 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.1371 [0.1235, 0.1507] sex, age, birth date, deprivation index, 16 PCs —
PPM010870 PGS001999
(portability-PLR_play_computer)
 PSS008585|
Greater Middle Eastern Ancestry|
1,143 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.0933 [0.035, 0.151] sex, age, birth date, deprivation index, 16 PCs —
PPM010871 PGS001999
(portability-PLR_play_computer)
 PSS008363|
South Asian Ancestry|
6,108 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.0869 [0.0619, 0.1117] sex, age, birth date, deprivation index, 16 PCs —
PPM010872 PGS001999
(portability-PLR_play_computer)
 PSS008140|
East Asian Ancestry|
1,782 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.0169 [-0.0298, 0.0635] sex, age, birth date, deprivation index, 16 PCs —
PPM010873 PGS001999
(portability-PLR_play_computer)
 PSS007927|
African Ancestry|
2,445 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.0494 [0.0096, 0.089] sex, age, birth date, deprivation index, 16 PCs —
PPM010874 PGS001999
(portability-PLR_play_computer)
 PSS009031|
African Ancestry|
3,818 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.0465 [0.0147, 0.0782] sex, age, birth date, deprivation index, 16 PCs —
PPM010868 PGS001999
(portability-PLR_play_computer)
 PSS009257|
European Ancestry|
4,117 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.1306 [0.1003, 0.1605] sex, age, birth date, deprivation index, 16 PCs —
PPM010869 PGS001999
(portability-PLR_play_computer)
 PSS008811|
European Ancestry|
6,626 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.1279 [0.1041, 0.1515] sex, age, birth date, deprivation index, 16 PCs —
PPM011959 PGS002139
(portability-ldpred2_geek_time)
 PSS009409|
European Ancestry|
19,674 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.1859 [0.1723, 0.1993] sex, age, birth date, deprivation index, 16 PCs —
PPM011960 PGS002139
(portability-ldpred2_geek_time)
 PSS009183|
European Ancestry|
4,027 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.1371 [0.1066, 0.1673] sex, age, birth date, deprivation index, 16 PCs —
PPM011961 PGS002139
(portability-ldpred2_geek_time)
 PSS008737|
European Ancestry|
6,466 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.1546 [0.1307, 0.1784] sex, age, birth date, deprivation index, 16 PCs —
PPM011962 PGS002139
(portability-ldpred2_geek_time)
 PSS008511|
Greater Middle Eastern Ancestry|
1,099 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.1307 [0.0715, 0.1889] sex, age, birth date, deprivation index, 16 PCs —
PPM011963 PGS002139
(portability-ldpred2_geek_time)
 PSS008289|
South Asian Ancestry|
5,720 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.0943 [0.0685, 0.1199] sex, age, birth date, deprivation index, 16 PCs —
PPM011964 PGS002139
(portability-ldpred2_geek_time)
 PSS008066|
East Asian Ancestry|
1,721 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.0539 [0.0064, 0.1012] sex, age, birth date, deprivation index, 16 PCs —
PPM011965 PGS002139
(portability-ldpred2_geek_time)
 PSS007853|
African Ancestry|
2,285 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.0537 [0.0126, 0.0947] sex, age, birth date, deprivation index, 16 PCs —
PPM011966 PGS002139
(portability-ldpred2_geek_time)
 PSS008957|
African Ancestry|
3,550 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Time spent watching television (TV) or using computer — — Partial Correlation (partial-r): 0.0314 [-0.0016, 0.0643] sex, age, birth date, deprivation index, 16 PCs —
PPM012583 PGS002217
(portability-ldpred2_play_computer)
 PSS009483|
European Ancestry|
19,980 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.1516 [0.138, 0.1651] sex, age, birth date, deprivation index, 16 PCs —
PPM012585 PGS002217
(portability-ldpred2_play_computer)
 PSS008811|
European Ancestry|
6,626 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.1404 [0.1167, 0.1639] sex, age, birth date, deprivation index, 16 PCs —
PPM012586 PGS002217
(portability-ldpred2_play_computer)
 PSS008585|
Greater Middle Eastern Ancestry|
1,143 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.0915 [0.0331, 0.1492] sex, age, birth date, deprivation index, 16 PCs —
PPM012587 PGS002217
(portability-ldpred2_play_computer)
 PSS008363|
South Asian Ancestry|
6,108 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.0871 [0.0621, 0.112] sex, age, birth date, deprivation index, 16 PCs —
PPM012588 PGS002217
(portability-ldpred2_play_computer)
 PSS008140|
East Asian Ancestry|
1,782 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.0686 [0.022, 0.1149] sex, age, birth date, deprivation index, 16 PCs —
PPM012589 PGS002217
(portability-ldpred2_play_computer)
 PSS007927|
African Ancestry|
2,445 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.0742 [0.0345, 0.1137] sex, age, birth date, deprivation index, 16 PCs —
PPM012590 PGS002217
(portability-ldpred2_play_computer)
 PSS009031|
African Ancestry|
3,818 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.0572 [0.0255, 0.0889] sex, age, birth date, deprivation index, 16 PCs —
PPM012584 PGS002217
(portability-ldpred2_play_computer)
 PSS009257|
European Ancestry|
4,117 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Plays computer games — — Partial Correlation (partial-r): 0.159 [0.129, 0.1887] sex, age, birth date, deprivation index, 16 PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS009031 — — 3,818 individuals — African unspecified Nigeria (West Africa) UKB —
PSS008140 — — 1,782 individuals — East Asian China (East Asia) UKB —
PSS009183 — — 4,027 individuals — European Poland (NE Europe) UKB —
PSS008289 — — 5,720 individuals — South Asian India (South Asia) UKB —
PSS008811 — — 6,626 individuals — European Italy (South Europe) UKB —
PSS007927 — — 2,445 individuals — African American or Afro-Caribbean Carribean UKB —
PSS008957 — — 3,550 individuals — African unspecified Nigeria (West Africa) UKB —
PSS004981 — — 6,346 individuals — African unspecified — UKB —
PSS004982 — — 1,654 individuals — East Asian — UKB —
PSS004983 — — 24,878 individuals — European non-white British ancestry UKB —
PSS004984 — — 7,543 individuals — South Asian — UKB —
PSS004985 — — 67,390 individuals — European white British ancestry UKB Testing cohort (heldout set)
PSS008066 — — 1,721 individuals — East Asian China (East Asia) UKB —
PSS008585 — — 1,143 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS009483 — — 19,980 individuals — European UK (+ Ireland) UKB —
PSS008737 — — 6,466 individuals — European Italy (South Europe) UKB —
PSS009257 — — 4,117 individuals — European Poland (NE Europe) UKB —
PSS008363 — — 6,108 individuals — South Asian India (South Asia) UKB —
PSS007853 — — 2,285 individuals — African American or Afro-Caribbean Carribean UKB —
PSS008511 — — 1,099 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS009409 — — 19,674 individuals — European UK (+ Ireland) UKB —