Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0010729 |
Description | Quantification of some aspect of exposure to incident light from the sun. |
Trait category |
Other measurement
|
Synonym | sunlight exposure measurement |
Mapped term | PMID:25590795 |
Polygenic Score ID & Name
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PGS Publication ID (PGP)
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Reported Trait
|
Mapped Trait(s) (Ontology)
|
Number of Variants
|
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link)
|
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PGS000980 (GBE_BIN_FC40002267) | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Use of sun / ultraviolet protection (always) | sun exposure measurement | 2,594 | - | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000980/ScoringFiles/PGS000980.txt.gz |
PGS000982 (GBE_BIN_FC10002267) | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Use of sun / ultraviolet protection (never / rarely) | sun exposure measurement | 1,141 | - | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000982/ScoringFiles/PGS000982.txt.gz |
PGS001535 (GBE_BIN_FC20002267) | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Use of sun/uv protection (Sometimes) | sun exposure measurement | 309 | - | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001535/ScoringFiles/PGS001535.txt.gz |
PGS001993 (portability-PLR_more_sunscreen) | PGP000263 | Privé F et al. Am J Hum Genet (2022) | Use of sun/uv protection | sun exposure measurement | 17,282 | - | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001993/ScoringFiles/PGS001993.txt.gz |
PGS002210 (portability-ldpred2_more_sunscreen) | PGP000263 | Privé F et al. Am J Hum Genet (2022) | Use of sun/uv protection | sun exposure measurement | 821,654 | - | https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002210/ScoringFiles/PGS002210.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score
|
PGS Sample Set ID (PSS) |
Performance Source
|
Trait
|
PGS Effect Sizes (per SD change) |
Classification Metrics
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Other Metrics
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Covariates Included in the Model
|
PGS Performance: Other Relevant Information |
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PPM005190 | PGS001535 (GBE_BIN_FC20002267) | PSS003830| African Ancestry| 6,273 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Sometimes) | — | AUROC: 0.5906 [0.57555, 0.60565] | R²: 0.03109 Incremental AUROC (full-covars): -0.00144 PGS R2 (no covariates): 0.00136 PGS AUROC (no covariates): 0.48531 [0.46984, 0.50078] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM005191 | PGS001535 (GBE_BIN_FC20002267) | PSS003831| East Asian Ancestry| 1,652 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Sometimes) | — | AUROC: 0.55282 [0.52505, 0.58059] | R²: 0.01545 Incremental AUROC (full-covars): 0.00303 PGS R2 (no covariates): 0.00113 PGS AUROC (no covariates): 0.51387 [0.48597, 0.54177] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM005192 | PGS001535 (GBE_BIN_FC20002267) | PSS003832| European Ancestry| 24,868 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Sometimes) | — | AUROC: 0.59511 [0.58776, 0.60245] | R²: 0.03349 Incremental AUROC (full-covars): 0.0029 PGS R2 (no covariates): 0.00751 PGS AUROC (no covariates): 0.54353 [0.53602, 0.55103] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM005193 | PGS001535 (GBE_BIN_FC20002267) | PSS003833| South Asian Ancestry| 7,396 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Sometimes) | — | AUROC: 0.55494 [0.54118, 0.5687] | R²: 0.01063 Incremental AUROC (full-covars): -0.00239 PGS R2 (no covariates): 0.00017 PGS AUROC (no covariates): 0.49173 [0.47787, 0.50558] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM005194 | PGS001535 (GBE_BIN_FC20002267) | PSS003834| European Ancestry| 67,387 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Sometimes) | — | AUROC: 0.59313 [0.58866, 0.5976] | R²: 0.03328 Incremental AUROC (full-covars): 0.00692 PGS R2 (no covariates): 0.00443 PGS AUROC (no covariates): 0.53162 [0.52709, 0.53614] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM007688 | PGS000980 (GBE_BIN_FC40002267) | PSS003929| African Ancestry| 6,273 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Always) | — | AUROC: 0.64912 [0.62037, 0.67788] | R²: 0.04065 Incremental AUROC (full-covars): -0.00306 PGS R2 (no covariates): 0.00204 PGS AUROC (no covariates): 0.53089 [0.5, 0.56177] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM007689 | PGS000980 (GBE_BIN_FC40002267) | PSS003930| East Asian Ancestry| 1,652 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Always) | — | AUROC: 0.65218 [0.6125, 0.69186] | R²: 0.0619 Incremental AUROC (full-covars): 0.00077 PGS R2 (no covariates): 0.00031 PGS AUROC (no covariates): 0.51403 [0.47131, 0.55674] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM007690 | PGS000980 (GBE_BIN_FC40002267) | PSS003931| European Ancestry| 24,868 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Always) | — | AUROC: 0.64596 [0.63785, 0.65407] | R²: 0.06856 Incremental AUROC (full-covars): 0.0058 PGS R2 (no covariates): 0.01625 PGS AUROC (no covariates): 0.57105 [0.56245, 0.57964] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM007691 | PGS000980 (GBE_BIN_FC40002267) | PSS003932| South Asian Ancestry| 7,396 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Always) | — | AUROC: 0.63507 [0.60805, 0.6621] | PGS R2 (no covariates): 0.00075 R²: 0.03575 Incremental AUROC (full-covars): -0.00025 PGS AUROC (no covariates): 0.51757 [0.4904, 0.54473] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM007692 | PGS000980 (GBE_BIN_FC40002267) | PSS003933| European Ancestry| 67,387 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Always) | — | AUROC: 0.63198 [0.62709, 0.63688] | R²: 0.05677 Incremental AUROC (full-covars): 0.01257 PGS R2 (no covariates): 0.01131 PGS AUROC (no covariates): 0.55692 [0.55172, 0.56212] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM007693 | PGS000982 (GBE_BIN_FC10002267) | PSS003716| African Ancestry| 6,273 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Never/rarely) | — | AUROC: 0.64715 [0.63358, 0.66073] | R²: 0.08512 Incremental AUROC (full-covars): -0.00513 PGS R2 (no covariates): 0.00843 PGS AUROC (no covariates): 0.53885 [0.52453, 0.55317] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM007694 | PGS000982 (GBE_BIN_FC10002267) | PSS003717| East Asian Ancestry| 1,652 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Never/rarely) | — | AUROC: 0.65071 [0.62093, 0.68049] | R²: 0.08666 Incremental AUROC (full-covars): 0.00648 PGS R2 (no covariates): 0.00172 PGS AUROC (no covariates): 0.52165 [0.49059, 0.5527] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM007695 | PGS000982 (GBE_BIN_FC10002267) | PSS003718| European Ancestry| 24,868 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Never/rarely) | — | AUROC: 0.69857 [0.68892, 0.70822] | R²: 0.09864 Incremental AUROC (full-covars): 0.00464 PGS R2 (no covariates): 0.01659 PGS AUROC (no covariates): 0.5824 [0.57161, 0.5932] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM007696 | PGS000982 (GBE_BIN_FC10002267) | PSS003719| South Asian Ancestry| 7,396 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Never/rarely) | — | AUROC: 0.61231 [0.59955, 0.62507] | R²: 0.05067 Incremental AUROC (full-covars): -0.00303 PGS R2 (no covariates): 0.00035 PGS AUROC (no covariates): 0.51061 [0.49745, 0.52377] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PPM007697 | PGS000982 (GBE_BIN_FC10002267) | PSS003720| European Ancestry| 67,387 individuals | PGP000244 | Tanigawa Y et al. PLoS Genet (2022) | Reported Trait: Use of sun/uv protection (Never/rarely) | — | AUROC: 0.6934 [0.68657, 0.70024] | R²: 0.08321 Incremental AUROC (full-covars): 0.01615 PGS R2 (no covariates): 0.00982 PGS AUROC (no covariates): 0.56628 [0.55865, 0.5739] | age, sex, UKB array type, Genotype PCs | Full Model & PGS R2 is estimated using Nagelkerke's method |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods
|
Participant Follow-up Time
|
Sample Numbers
|
Age of Study Participants
|
Sample Ancestry
|
Additional Ancestry Description
|
Cohort(s)
|
Additional Sample/Cohort Information
|
---|---|---|---|---|---|---|---|---|
PSS003716 | — | — | [
| — | African unspecified | — | UKB | — |
PSS003717 | — | — | [
| — | East Asian | — | UKB | — |
PSS003718 | — | — | [
| — | European | non-white British ancestry | UKB | — |
PSS003719 | — | — | [
| — | South Asian | — | UKB | — |
PSS003720 | — | — | [
| — | European | white British ancestry | UKB | Testing cohort (heldout set) |
PSS003830 | — | — | [
| — | African unspecified | — | UKB | — |
PSS003831 | — | — | [
| — | East Asian | — | UKB | — |
PSS003832 | — | — | [
| — | European | non-white British ancestry | UKB | — |
PSS003833 | — | — | [
| — | South Asian | — | UKB | — |
PSS003834 | — | — | [
| — | European | white British ancestry | UKB | Testing cohort (heldout set) |
PSS003929 | — | — | [
| — | African unspecified | — | UKB | — |
PSS003930 | — | — | [
| — | East Asian | — | UKB | — |
PSS003931 | — | — | [
| — | European | non-white British ancestry | UKB | — |
PSS003932 | — | — | [
| — | South Asian | — | UKB | — |
PSS003933 | — | — | [
| — | European | white British ancestry | UKB | Testing cohort (heldout set) |