Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000102
(mono)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Monocyte count monocyte count 28,162
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000102/ScoringFiles/PGS000102.txt.gz
PGS000103
(mono_p)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Monocyte percentage of white cells monocyte percentage of leukocytes 22,843
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000103/ScoringFiles/PGS000103.txt.gz
PGS000104
(mpv)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Mean platelet volume mean platelet volume 25,745
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000104/ScoringFiles/PGS000104.txt.gz
PGS000105
(neut)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Neutrophil count neutrophil count 23,864
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000105/ScoringFiles/PGS000105.txt.gz
PGS000106
(neut_p)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Neutrophil percentage of white cells neutrophil percentage of leukocytes 22,049
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000106/ScoringFiles/PGS000106.txt.gz
PGS000107
(pct)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Platelet crit platelet crit 30,459
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000107/ScoringFiles/PGS000107.txt.gz
PGS000108
(pdw)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Platelet distribution width platelet component distribution width 25,995
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000108/ScoringFiles/PGS000108.txt.gz
PGS000109
(plt)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Platelet count platelet count 26,683
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000109/ScoringFiles/PGS000109.txt.gz
PGS000110
(rbc)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Red blood cell count erythrocyte count 23,242
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000110/ScoringFiles/PGS000110.txt.gz
PGS000111
(ret)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Reticulocyte count reticulocyte count 26,077
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000111/ScoringFiles/PGS000111.txt.gz
PGS000112
(ret_p)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 Reticulocyte fraction of red cells reticulocyte count 25,939
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000112/ScoringFiles/PGS000112.txt.gz
PGS000113
(wbc)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 White blood cell count leukocyte count 28,383
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000113/ScoringFiles/PGS000113.txt.gz
PGS000114
(GRS-JIA-20)
 PGP000052 |
Cánovas R et al. Ann Rheum Dis (2020)
 Juvenile Idiopathic Arthritis juvenile idiopathic arthritis 26
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000114/ScoringFiles/PGS000114.txt.gz
PGS000115
(LDL-C_20)
 PGP000053 |
Trinder M et al. JAMA Cardiol (2020)
 LDL cholesterol low density lipoprotein cholesterol measurement 223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000115/ScoringFiles/PGS000115.txt.gz
PGS000116
(CAD_EJ2020)
 PGP000054 |
Elliott J et al. JAMA (2020)
 Coronary artery disease coronary artery disease 40,079
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000116/ScoringFiles/PGS000116.txt.gz - Check Terms/Licenses
PGS000117
(CVD_EJ2020)
 PGP000054 |
Elliott J et al. JAMA (2020)
 Cardiovascular disease cardiovascular disease 297,862
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000117/ScoringFiles/PGS000117.txt.gz - Check Terms/Licenses
PGS000118
(MEL29)
 PGP000055 |
Fritsche LG et al. PLoS Genet (2019)
 Melanoma melanoma 29
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000118/ScoringFiles/PGS000118.txt.gz
PGS000119
(BCC32)
 PGP000055 |
Fritsche LG et al. PLoS Genet (2019)
 Basal cell carcinoma basal cell carcinoma 32
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000119/ScoringFiles/PGS000119.txt.gz
PGS000120
(SCC10)
 PGP000055 |
Fritsche LG et al. PLoS Genet (2019)
 Squamous cell carcinoma squamous cell carcinoma 10
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000120/ScoringFiles/PGS000120.txt.gz
PGS000121
(2018_BMD62_GRS.FN)
 PGP000056 |
Ho-Le TP et al. J Bone Miner Res (2016)
 Bone mineral density (BMD) bone density 62
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000121/ScoringFiles/PGS000121.txt.gz
PGS000122
(2018_BMD33_GRS.FN)
 PGP000056 |
Ho-Le TP et al. J Bone Miner Res (2016)
 Bone mineral density (BMD) bone density 33
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000122/ScoringFiles/PGS000122.txt.gz
PGS000123
(2017_PD16)
 PGP000059 |
Ibanez L et al. BMC Neurol (2017)
 Parkinson's disease Parkinson disease 16
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000123/ScoringFiles/PGS000123.txt.gz
PGS000124
(IOP_AS)
 PGP000061 |
MacGregor S et al. Nat Genet (2018)
 Intraocular pressure intraocular pressure measurement 103
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000124/ScoringFiles/PGS000124.txt.gz
PGS000125
(Qi_T2D_2017)
 PGP000062 |
Qi Q et al. Diabetes (2017)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 80
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000125/ScoringFiles/PGS000125.txt.gz
PGS000126
(Urate_GRS)
 PGP000063 |
Tin A et al. Nat Genet (2019)
 Serum urate urate measurement 114
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000126/ScoringFiles/PGS000126.txt.gz
PGS000127
(GS-E-EUR)
 PGP000064 |
Wheeler E et al. PLoS Med (2017)
 HbA1c HbA1c measurement 21
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000127/ScoringFiles/PGS000127.txt.gz
PGS000128
(GS-E-AFR)
 PGP000064 |
Wheeler E et al. PLoS Med (2017)
 HbA1c HbA1c measurement 22
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000128/ScoringFiles/PGS000128.txt.gz
PGS000129
(GS-E-EAS)
 PGP000064 |
Wheeler E et al. PLoS Med (2017)
 HbA1c HbA1c measurement 17
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000129/ScoringFiles/PGS000129.txt.gz
PGS000130
(GS-G-EUR)
 PGP000064 |
Wheeler E et al. PLoS Med (2017)
 HbA1c HbA1c measurement 19
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000130/ScoringFiles/PGS000130.txt.gz
PGS000131
(GS-G-AFR)
 PGP000064 |
Wheeler E et al. PLoS Med (2017)
 HbA1c HbA1c measurement 19
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000131/ScoringFiles/PGS000131.txt.gz
PGS000132
(GS-G-EAS)
 PGP000064 |
Wheeler E et al. PLoS Med (2017)
 HbA1c HbA1c measurement 19
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000132/ScoringFiles/PGS000132.txt.gz
PGS000133
(SCZ_BVU)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 604,645
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000133/ScoringFiles/PGS000133.txt.gz
PGS000134
(SCZ_GHS)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 830,589
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000134/ScoringFiles/PGS000134.txt.gz
PGS000135
(SCZ_MTS)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 972,439
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000135/ScoringFiles/PGS000135.txt.gz
PGS000136
(SCZ_PBK)
 PGP000065 |
Zheutlin AB et al. Am J Psychiatry (2019)
 Schizophrenia schizophrenia 833,502
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000136/ScoringFiles/PGS000136.txt.gz
PGS000137
(MTAG_glaucoma)
 PGP000066 |
Craig JE et al. Nat Genet (2020)
 Glaucoma glaucoma 2,673
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000137/ScoringFiles/PGS000137.txt.gz
PGS000138
(LifetimeMDD)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Lifetime Major Depressive Disorder major depressive disorder 22,274
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000138/ScoringFiles/PGS000138.txt.gz
PGS000139
(MDDRecur)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Lifetime Major Depressive Disorder (with recurrence) recurrent,
major depressive disorder		 21,980
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000139/ScoringFiles/PGS000139.txt.gz
PGS000140
(GPpsy)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Broad Depression (seen a General Practitioner for nerves, anxiety, tension or depression) seeing a general practitioner for nerves, anxiety, tension or depression, self-reported,
depressive disorder		 24,665
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000140/ScoringFiles/PGS000140.txt.gz
PGS000141
(Psypsy)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Seen a psychiatrist for nerves, anxiety, tension or depression seeing a psychiatrist for nerves, anxiety, tension or depression, self-reported,
depressive disorder		 22,728
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000141/ScoringFiles/PGS000141.txt.gz
PGS000142
(DepAll)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Probable Depression (low mood or anhedonia, and seen a GP or psychiatrist for nerves, anxiety, tension or depression) seeing a general practitioner for nerves, anxiety, tension or depression, self-reported,
seeing a psychiatrist for nerves, anxiety, tension or depression, self-reported,
depressive disorder		 21,908
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000142/ScoringFiles/PGS000142.txt.gz
PGS000143
(GPNoDep)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Seen a General Practitioner for nerves, anxiety, tension or depression (without report of low mood or anhedonia) seeing a general practitioner for nerves, anxiety, tension or depression, self-reported 21,042
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000143/ScoringFiles/PGS000143.txt.gz
PGS000144
(SelfRepDep)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Self-reported depression or depression symptoms depressive symptom measurement,
self-reported trait		 21,828
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000144/ScoringFiles/PGS000144.txt.gz
PGS000145
(ICD10Dep)
 PGP000068 |
Cai N et al. Nat Genet (2020)
 Depression (ICD-10 defined) major depressive disorder 21,510
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000145/ScoringFiles/PGS000145.txt.gz
PGS000146
(CRC_GRS_27)
 PGP000069 |
Hsu L et al. Gastroenterology (2015)
 Colorectal cancer colorectal cancer 27
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000146/ScoringFiles/PGS000146.txt.gz
PGS000147
(CRC21)
 PGP000070 |
Ibáñez-Sanz G et al. Sci Rep (2017)
 Colorectal cancer colorectal cancer 21
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000147/ScoringFiles/PGS000147.txt.gz
PGS000148
(CRC63)
 PGP000071 |
Jeon J et al. Gastroenterology (2018)
 Colorectal cancer colorectal cancer 63
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000148/ScoringFiles/PGS000148.txt.gz
PGS000149
(CRC41)
 PGP000072 |
Smith T et al. Br J Cancer (2018)
 Colorectal cancer colorectal cancer 41
-
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000149/ScoringFiles/PGS000149.txt.gz
PGS000150
(GRS48)
 PGP000073 |
Weigl K et al. Gastroenterology (2018)
 Colorectal cancer colorectal cancer 48
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000150/ScoringFiles/PGS000150.txt.gz
PGS000151
(SC_GRS)
 PGP000074 |
Xin J et al. Gene (2018)
 Colorectal cancer colorectal cancer 14
-
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000151/ScoringFiles/PGS000151.txt.gz
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