PGS Publication: PGP000720

Publication Information (EuropePMC)
Title Plant-based dietary patterns and genetic susceptibility to obesity in the CARTaGENE cohort.
PubMed ID 38057558(Europe PMC)
doi 10.1002/oby.23944
Publication Date Dec. 6, 2023
Journal Obesity (Silver Spring)
Author(s) Masip G, Attar A, Nielsen DE.
Released in PGS Catalog: April 17, 2025

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported

External PGS Evaluated By This Publication

Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000027
(GPS_BMI)
 PGP000017 |
Khera AV et al. Cell (2019)
 Body mass index (BMI) body mass index 2,100,302
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000027/ScoringFiles/PGS000027.txt.gz - Check Terms/Licenses
PGS002251
(PRS97_BMI)
 PGP000278 |
Dashti HS et al. BMC Med (2022)
 Body mass index (BMI) body mass index 97
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002251/ScoringFiles/PGS002251.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM022495 PGS000027
(GPS_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: Waist circumference β: 0.23 [0.21, 0.25] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022496 PGS000027
(GPS_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: BMI β: 0.29 [0.27, 0.32] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022497 PGS000027
(GPS_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: Body fat percentage β: 0.21 [0.19, 0.23] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022498 PGS002251
(PRS97_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: Waist circumference β: 0.05 [0.02, 0.08] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022499 PGS002251
(PRS97_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: BMI β: 0.09 [0.05, 0.12] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022500 PGS002251
(PRS97_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: Body fat percentage β: 0.06 [0.04, 0.09] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022501 PGS000027
(GPS_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: Waist circumference x Fruits interaction β: 0.02 [0.0, 0.04] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022502 PGS000027
(GPS_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: Waist circumference x Sugar-sweetened beverages interaction β: -0.02 [-0.04, 0.0] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022503 PGS000027
(GPS_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: BMI x Unhealthy PDI interaction β: -0.02 [-0.05, 0.0] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022504 PGS000027
(GPS_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: BMI x Fruits interaction β: 0.03 [0.0, 0.05] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022505 PGS000027
(GPS_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: BMI x Vegetables interaction β: 0.03 [0.01, 0.05] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022506 PGS000027
(GPS_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: BMI x Sugar-sweetened beverages interaction β: -0.03 [-0.05, -0.01] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —
PPM022507 PGS000027
(GPS_BMI)
 PSS011974|
Multi-ancestry (including European)|
6,767 individuals
 PGP000720 |
Masip G et al. Obesity (Silver Spring) (2023)
|Ext.		 Reported Trait: Body fat percentage x Sugar-sweetened beverages interaction β: -0.02 [-0.04, 0.0] — — age, sex, principal components of ancestry, alcohol intake, smoking, education, sleeping time, income, anxiety, physical activity, energy intake, and energy misreporter status —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS011974 — — 6,251 individuals — European — CARTaGENE —
PSS011974 — — 516 individuals — Not reported — CARTaGENE —