Trait: sitting height measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0011011
Description Quantification of some aspect of height, when assuming a sitting position.
Trait category
Other measurement
Mapped term PMID:33623009

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
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Polygenic Score ID & Name
PGS Publication ID (PGP)
Reported Trait
Mapped Trait(s) (Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File (FTP Link)
PGS000969
(GBE_INI20015)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Sitting heightsitting height measurement36,345
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000969/ScoringFiles/PGS000969.txt.gz
PGS002005
(portability-PLR_sitting_height)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Sitting heightsitting height measurement118,423
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002005/ScoringFiles/PGS002005.txt.gz
PGS002224
(portability-ldpred2_sitting_height)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Sitting heightsitting height measurement910,252
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002224/ScoringFiles/PGS002224.txt.gz
PGS003569
(cont-decay-sitting_height)
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		Sitting heightsitting height measurement979,739
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003569/ScoringFiles/PGS003569.txt.gz
PGS003896
(INI20015)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Sitting heightsitting height measurement44,543
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003896/ScoringFiles/PGS003896.txt.gz
PGS004408
(X20015.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Sitting heightsitting height measurement1,059,939
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004408/ScoringFiles/PGS004408.txt.gz
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Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

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PGS Performance
Metric ID (PPM)
Evaluated Score
PGS Sample Set ID
(PSS)
Performance Source
Trait
PGS Effect Sizes
(per SD change)
Classification Metrics
Other Metrics
Covariates Included in the Model
PGS Performance:
Other Relevant Information
PPM007663PGS000969
(GBE_INI20015)
PSS004886|
African Ancestry|
6,403 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Sitting height——R²: 0.3682 [0.34957, 0.38684]
Incremental R2 (full-covars): 0.01039
PGS R2 (no covariates): 0.02603 [0.01839, 0.03367]		age, sex, UKB array type, Genotype PCs—
PPM007664PGS000969
(GBE_INI20015)
PSS004887|
East Asian Ancestry|
1,698 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Sitting height——R²: 0.49052 [0.45671, 0.52434]
Incremental R2 (full-covars): 0.04748
PGS R2 (no covariates): 0.07798 [0.05358, 0.10237]		age, sex, UKB array type, Genotype PCs—
PPM007665PGS000969
(GBE_INI20015)
PSS004888|
European Ancestry|
24,825 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Sitting height——R²: 0.55998 [0.5518, 0.56815]
Incremental R2 (full-covars): 0.12693
PGS R2 (no covariates): 0.13335 [0.12549, 0.14121]		age, sex, UKB array type, Genotype PCs—
PPM007666PGS000969
(GBE_INI20015)
PSS004889|
South Asian Ancestry|
7,645 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Sitting height——R²: 0.52117 [0.50586, 0.53647]
Incremental R2 (full-covars): 0.06153
PGS R2 (no covariates): 0.07384 [0.0627, 0.08499]		age, sex, UKB array type, Genotype PCs—
PPM007667PGS000969
(GBE_INI20015)
PSS004890|
European Ancestry|
67,301 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Sitting height——R²: 0.56224 [0.55729, 0.5672]
Incremental R2 (full-covars): 0.12957
PGS R2 (no covariates): 0.1276 [0.1229, 0.1323]		age, sex, UKB array type, Genotype PCs—
PPM010914PGS002005
(portability-PLR_sitting_height)
PSS009490|
European Ancestry|
19,908 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Sitting height——Partial Correlation (partial-r): 0.5055 [0.4951, 0.5158]sex, age, birth date, deprivation index, 16 PCs—
PPM010915PGS002005
(portability-PLR_sitting_height)
PSS009264|
European Ancestry|
4,122 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Sitting height——Partial Correlation (partial-r): 0.487 [0.4633, 0.51]sex, age, birth date, deprivation index, 16 PCs—
PPM010916PGS002005
(portability-PLR_sitting_height)
PSS008818|
European Ancestry|
6,623 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Sitting height——Partial Correlation (partial-r): 0.4655 [0.4464, 0.4842]sex, age, birth date, deprivation index, 16 PCs—
PPM010917PGS002005
(portability-PLR_sitting_height)
PSS008592|
Greater Middle Eastern Ancestry|
1,175 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Sitting height——Partial Correlation (partial-r): 0.4025 [0.353, 0.4497]sex, age, birth date, deprivation index, 16 PCs—
PPM010918PGS002005
(portability-PLR_sitting_height)
PSS008370|
South Asian Ancestry|
6,123 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Sitting height——Partial Correlation (partial-r): 0.3897 [0.3682, 0.4108]sex, age, birth date, deprivation index, 16 PCs—
PPM010919PGS002005
(portability-PLR_sitting_height)
PSS008146|
East Asian Ancestry|
1,800 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Sitting height——Partial Correlation (partial-r): 0.3397 [0.298, 0.3802]sex, age, birth date, deprivation index, 16 PCs—
PPM010920PGS002005
(portability-PLR_sitting_height)
PSS007934|
African Ancestry|
2,443 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Sitting height——Partial Correlation (partial-r): 0.24 [0.2021, 0.2772]sex, age, birth date, deprivation index, 16 PCs—
PPM010921PGS002005
(portability-PLR_sitting_height)
PSS009038|
African Ancestry|
3,857 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Sitting height——Partial Correlation (partial-r): 0.2113 [0.1808, 0.2413]sex, age, birth date, deprivation index, 16 PCs—
PPM012638PGS002224
(portability-ldpred2_sitting_height)
PSS009490|
European Ancestry|
19,908 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Sitting height——Partial Correlation (partial-r): 0.4963 [0.4858, 0.5067]sex, age, birth date, deprivation index, 16 PCs—
PPM012639PGS002224
(portability-ldpred2_sitting_height)
PSS009264|
European Ancestry|
4,122 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Sitting height——Partial Correlation (partial-r): 0.4829 [0.4591, 0.506]sex, age, birth date, deprivation index, 16 PCs—
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Evaluated Samples

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PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods
Participant Follow-up Time
Sample Numbers
Age of Study Participants
Sample Ancestry
Additional Ancestry Description
Cohort(s)
Additional Sample/Cohort Information
PSS004886——6,403 individuals—African unspecified—UKB—
PSS004887——1,698 individuals—East Asian—UKB—
PSS004888——24,825 individuals—Europeannon-white British ancestryUKB—
PSS004889——7,645 individuals—South Asian—UKB—
PSS004890——67,301 individuals—Europeanwhite British ancestryUKBTesting cohort (heldout set)
PSS007934——2,443 individuals—African American or Afro-CaribbeanCarribeanUKB—
PSS008146——1,800 individuals—East AsianChina (East Asia)UKB—
PSS008370——6,123 individuals—South AsianIndia (South Asia)UKB—
PSS008592——1,175 individuals—Greater Middle Eastern (Middle Eastern, North African or Persian)Iran (Middle East)UKB—
PSS008818——6,623 individuals—EuropeanItaly (South Europe)UKB—
PSS009038——3,857 individuals—African unspecifiedNigeria (West Africa)UKB—
PSS009264——4,122 individuals—EuropeanPoland (NE Europe)UKB—
PSS009490——19,908 individuals—EuropeanUK (+ Ireland)UKB—
PSS010265——2,335 individuals,
45.0 % Male samples
Mean = 58.1 years
Sd = 7.1 years		EuropeanAshkenaziUKB—
PSS010349——2,430 individuals,
36.0 % Male samples
Mean = 52.5 years
Sd = 8.1 years		African American or Afro-CaribbeanCaribbeanUKB—
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