Trait: urinary metabolite measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0005116
Description quantification of some metabolite in urine
Trait category
Other measurement
Child trait(s) 3 child traits

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Note: This table shows all PGS for "urinary metabolite measurement" and any child terms of this trait in the EFO hierarchy by default.
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Polygenic Score ID & Name
PGS Publication ID (PGP)
Reported Trait
Mapped Trait(s) (Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File (FTP Link)
PGS000690
(snpnet.Microalbumin_in_urine)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Microalbumin in urine [mg/L]urinary microalbumin measurement111
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000690/ScoringFiles/PGS000690.txt.gz - Check Terms/Licenses
PGS000695
(snpnet.Sodium_in_urine)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Sodium in urine [mmol/L]urinary metabolite measurement,
sodium measurement		5,833
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000695/ScoringFiles/PGS000695.txt.gz - Check Terms/Licenses
PGS000822
(GRS_UACR)
PGP000206 |
Teumer A et al. Nat Commun (2019)
Urinary albumin to creatinine ratiourinary albumin to creatinine ratio59
G
-
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000822/ScoringFiles/PGS000822.txt.gz
PGS000861
(UACR)
PGP000211 |
Aly DM et al. Nat Genet (2021)
Urine Albumin-to-Creatinine ratiourinary albumin to creatinine ratio93
G
-
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000861/ScoringFiles/PGS000861.txt.gz
PGS000972
(GBE_BIN10030500)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Microalbumin [> 40 mg/L]urinary microalbumin measurement1,097
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000972/ScoringFiles/PGS000972.txt.gz
PGS001107
(GBE_BIN30030510)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
UACR [> 30 mg/g]urinary albumin to creatinine ratio1,040
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001107/ScoringFiles/PGS001107.txt.gz
PGS001967
(portability-PLR_log_microalbumin_urine)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Microalbumin in urineurinary microalbumin measurement948
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001967/ScoringFiles/PGS001967.txt.gz
PGS001980
(portability-PLR_log_urea)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Ureaurea measurement56,782
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001980/ScoringFiles/PGS001980.txt.gz
PGS002185
(portability-ldpred2_log_microalbumin_urine)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Microalbumin in urineurinary microalbumin measurement671,610
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002185/ScoringFiles/PGS002185.txt.gz
PGS002198
(portability-ldpred2_log_urea)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Ureaurea measurement820,118
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002198/ScoringFiles/PGS002198.txt.gz
PGS003553
(cont-decay-log_urea)
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		Ureaurea measurement979,739
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003553/ScoringFiles/PGS003553.txt.gz
PGS004331
(X30670.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Urea (mmol/L)urea measurement1,059,939
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004331/ScoringFiles/PGS004331.txt.gz
PGS004739
(BUN_PRSmix_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Ureaurea measurement587,237
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004739/ScoringFiles/PGS004739.txt.gz
PGS004740
(BUN_PRSmix_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Ureaurea measurement1,499,858
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004740/ScoringFiles/PGS004740.txt.gz
PGS004741
(BUN_PRSmixPlus_eur)
PGP000604 |
Truong B et al. Cell Genom (2024)
Ureaurea measurement1,178,386
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004741/ScoringFiles/PGS004741.txt.gz
PGS004742
(BUN_PRSmixPlus_sas)
PGP000604 |
Truong B et al. Cell Genom (2024)
Ureaurea measurement1,499,858
-
D
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004742/ScoringFiles/PGS004742.txt.gz
PGS004897
(UACR)
PGP000623 |
Cañadas-Garre M et al. Int J Mol Sci (2023)
Urinary albumin-to-creatinine ratiourinary albumin to creatinine ratio28
G
-
E
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004897/ScoringFiles/PGS004897.txt.gz
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Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

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PGS Performance
Metric ID (PPM)
Evaluated Score
PGS Sample Set ID
(PSS)
Performance Source
Trait
PGS Effect Sizes
(per SD change)
Classification Metrics
Other Metrics
Covariates Included in the Model
PGS Performance:
Other Relevant Information
PPM001418PGS000690
(snpnet.Microalbumin_in_urine)
PSS000724|
African Ancestry|
2,679 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L]——R²: 0.02307
Spearman's ρ: 0.013		Age, sex, PCs(1-40)—
PPM001423PGS000695
(snpnet.Sodium_in_urine)
PSS000749|
African Ancestry|
5,781 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L]——R²: 0.0456
Spearman's ρ: 0.029		Age, sex, PCs(1-40)—
PPM001453PGS000690
(snpnet.Microalbumin_in_urine)
PSS000725|
East Asian Ancestry|
323 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L]——R²: 0.00102
Spearman's ρ: 0.098		Age, sex, PCs(1-40)—
PPM001458PGS000695
(snpnet.Sodium_in_urine)
PSS000750|
East Asian Ancestry|
1,044 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L]——R²: 0.09743
Spearman's ρ: 0.068		Age, sex, PCs(1-40)—
PPM001488PGS000690
(snpnet.Microalbumin_in_urine)
PSS000726|
European Ancestry|
7,133 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L]——R²: 0.02086
Spearman's ρ: 0.023		Age, sex, PCs(1-40)—
PPM001493PGS000695
(snpnet.Sodium_in_urine)
PSS000751|
European Ancestry|
22,812 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L]——R²: 0.11027
Spearman's ρ: 0.077		Age, sex, PCs(1-40)—
PPM001523PGS000690
(snpnet.Microalbumin_in_urine)
PSS000727|
South Asian Ancestry|
2,560 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L]——R²: 0.02677
Spearman's ρ: 0.053		Age, sex, PCs(1-40)—
PPM001528PGS000695
(snpnet.Sodium_in_urine)
PSS000752|
South Asian Ancestry|
6,993 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L]——R²: 0.06605
Spearman's ρ: 0.059		Age, sex, PCs(1-40)—
PPM001558PGS000690
(snpnet.Microalbumin_in_urine)
PSS000728|
European Ancestry|
19,352 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L]——R²: 0.02007
Spearman's ρ: 0.021		Age, sex, PCs(1-40)—
PPM001563PGS000695
(snpnet.Sodium_in_urine)
PSS000753|
European Ancestry|
62,011 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L]——R²: 0.09883
Spearman's ρ: 0.09		Age, sex, PCs(1-40)—
PPM001588PGS000695
(snpnet.Sodium_in_urine)
PSS000836|
European Ancestry|
2,117 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L]——Spearman's ρ: 0.059Age, sex—
PPM001594PGS000690
(snpnet.Microalbumin_in_urine)
PSS000834|
European Ancestry|
1,998 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L]——Spearman's ρ: 0.017Age, sex—
PPM002203PGS000822
(GRS_UACR)
PSS001079|
European Ancestry|
232,751 individuals
PGP000206 |
Teumer A et al. Nat Commun (2019)
Reported Trait: Microalbuminuria——Odds Ratio (OR, top 25% vs bottom 25%): 1.69 [1.64, 1.75]
Beta (top 25% vs bottom 25%): 0.527 (0.018)		——
PPM002204PGS000822
(GRS_UACR)
PSS001074|
European Ancestry|
182,870 individuals
PGP000206 |
Teumer A et al. Nat Commun (2019)
Reported Trait: Disorders of lipid metabolismOR: 1.58
β: 0.46 (0.07)		——PCs(1-10), sex—
PPM002205PGS000822
(GRS_UACR)
PSS001074|
European Ancestry|
182,870 individuals
PGP000206 |
Teumer A et al. Nat Commun (2019)
Reported Trait: HyperlipidemiaOR: 1.58
β: 0.46 (0.07)		——PCs(1-10), sex—
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Evaluated Samples

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PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods
Participant Follow-up Time
Sample Numbers
Age of Study Participants
Sample Ancestry
Additional Ancestry Description
Cohort(s)
Additional Sample/Cohort Information
PSS000724——2,679 individuals—African unspecified—UKB—
PSS000725——323 individuals—East Asian—UKB—
PSS000726——7,133 individuals—EuropeanNon-British WhiteUKB—
PSS000727——2,560 individuals—South Asian—UKB—
PSS000728——19,352 individuals—European
(British)		—UKB—
PSS000749——5,781 individuals—African unspecified—UKB—
PSS000750——1,044 individuals—East Asian—UKB—
PSS000751——22,812 individuals—EuropeanNon-British WhiteUKB—
PSS000752——6,993 individuals—South Asian—UKB—
PSS000753——62,011 individuals—European
(British)		—UKB—
PSS000834——1,998 individuals—EuropeanParticipants self-identifying as whiteMESA—
PSS000836——2,117 individuals—EuropeanParticipants self-identifying as whiteMESA—
PSS001073Cases were individuals with hypertension. Of the 136,370 cases, 136,053 had essential hypertension.—
[
  • 136,370 cases
  • , 46,514 controls
]
—European—MVP—
PSS001074Cases were individuals with disorders of lipid metabolism. Of the 141,461 cases, 141,331 had hyperli... pidemia and 19,150 had mixed hyperlipidemia.Show more—
[
  • 141,461 cases
  • , 41,409 controls
]
—European—MVP—
PSS001075Cases were individuals with gout and other crystal arthropathies. Of the 15,484 cases, 15,011 specif... ically, had gout.Show more—
[
  • 15,484 cases
  • , 172,524 controls
]
—European—MVP—
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