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PGS Catalog
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Polygenic Scores (PGS)
Polygenic Scores (PGS)
Filter PGS by Participant Ancestry
Individuals included in:
Any Stage [G, D, E]
All Stages combined [G + D + E]
Development [G, D]
- GWAS [G]
- Score development [D]
PGS Evaluation [E]
G
- Source of Variant Associations (
G
WAS)
D
- Score
D
evelopment/Training
E
- PGS
E
valuation
List of ancestries includes:
--
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Display options:
Show European ancestry data
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only
Multi-ancestry data
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name
PGS Publication ID
(PGP)
Reported Trait
Mapped Trait(s)
(Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File
(FTP Link)
PGS000001
(PRS77_BC)
PGP000001
|
Mavaddat N
et al.
J Natl Cancer Inst (2015)
Breast cancer
breast carcinoma
77
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000001/ScoringFiles/PGS000001.txt.gz
PGS000002
(PRS77_ERpos)
PGP000001
|
Mavaddat N
et al.
J Natl Cancer Inst (2015)
ER-positive breast cancer
estrogen-receptor positive breast cancer
77
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000002/ScoringFiles/PGS000002.txt.gz
PGS000003
(PRS77_ERneg)
PGP000001
|
Mavaddat N
et al.
J Natl Cancer Inst (2015)
ER-negative breast cancer
estrogen-receptor negative breast cancer
77
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000003/ScoringFiles/PGS000003.txt.gz
PGS000004
(PRS313_BC)
PGP000002
|
Mavaddat N
et al.
Am J Hum Genet (2018)
Breast cancer
breast carcinoma
313
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000004/ScoringFiles/PGS000004.txt.gz
PGS000005
(PRS313_ERpos)
PGP000002
|
Mavaddat N
et al.
Am J Hum Genet (2018)
ER-positive breast cancer
estrogen-receptor positive breast cancer
313
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000005/ScoringFiles/PGS000005.txt.gz
PGS000006
(PRS313_ERneg)
PGP000002
|
Mavaddat N
et al.
Am J Hum Genet (2018)
ER-negative breast cancer
estrogen-receptor negative breast cancer
313
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000006/ScoringFiles/PGS000006.txt.gz
PGS000007
(PRS3820_BC)
PGP000002
|
Mavaddat N
et al.
Am J Hum Genet (2018)
Breast cancer
breast carcinoma
3,820
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000007/ScoringFiles/PGS000007.txt.gz
PGS000008
(PRS3820_ERpos)
PGP000002
|
Mavaddat N
et al.
Am J Hum Genet (2018)
ER-positive breast cancer
estrogen-receptor positive breast cancer
3,820
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000008/ScoringFiles/PGS000008.txt.gz
PGS000009
(PRS3820_ERneg)
PGP000002
|
Mavaddat N
et al.
Am J Hum Genet (2018)
ER-negative breast cancer
estrogen-receptor negative breast cancer
3,820
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000009/ScoringFiles/PGS000009.txt.gz
PGS000010
(GRS27)
PGP000003
|
Mega JL
et al.
Lancet (2015)
Coronary heart disease
coronary artery disease
27
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000010/ScoringFiles/PGS000010.txt.gz
PGS000011
(GRS50)
PGP000004
|
Tada H
et al.
Eur Heart J (2015)
Coronary artery disease
coronary artery disease
50
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000011/ScoringFiles/PGS000011.txt.gz
PGS000012
(GRS49K)
PGP000005
|
Abraham G
et al.
Eur Heart J (2016)
Coronary artery disease
coronary artery disease
49,310
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000012/ScoringFiles/PGS000012.txt.gz
PGS000013
(GPS_CAD)
PGP000006
|
Khera AV
et al.
Nat Genet (2018)
Coronary artery disease
coronary artery disease
6,630,150
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000013/ScoringFiles/PGS000013.txt.gz
- Check
Terms/Licenses
PGS000014
(GPS_T2D)
PGP000006
|
Khera AV
et al.
Nat Genet (2018)
Type 2 diabetes (T2D)
type 2 diabetes mellitus
6,917,436
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000014/ScoringFiles/PGS000014.txt.gz
- Check
Terms/Licenses
PGS000015
(GPS_BC)
PGP000006
|
Khera AV
et al.
Nat Genet (2018)
Breast cancer
breast carcinoma
5,218
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000015/ScoringFiles/PGS000015.txt.gz
- Check
Terms/Licenses
PGS000016
(GPS_AF)
PGP000006
|
Khera AV
et al.
Nat Genet (2018)
Atrial fibrillation
atrial fibrillation
6,730,541
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000016/ScoringFiles/PGS000016.txt.gz
- Check
Terms/Licenses
PGS000017
(GPS_IBD)
PGP000006
|
Khera AV
et al.
Nat Genet (2018)
Inflammatory bowel disease
inflammatory bowel disease
6,907,112
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000017/ScoringFiles/PGS000017.txt.gz
- Check
Terms/Licenses
PGS000018
(metaGRS_CAD)
PGP000007
|
Inouye M
et al.
J Am Coll Cardiol (2018)
Coronary artery disease
coronary artery disease
1,745,179
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000018/ScoringFiles/PGS000018.txt.gz
PGS000019
(GRS_CAD)
PGP000009
|
Paquette M
et al.
J Clin Lipidol (2017)
Coronary artery disease
coronary artery disease
192
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000019/ScoringFiles/PGS000019.txt.gz
PGS000020
(dGRS1000)
PGP000010
|
Läll K
et al.
Genet Med (2016)
Type 2 diabetes (T2D)
type 2 diabetes mellitus
7,502
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000020/ScoringFiles/PGS000020.txt.gz
PGS000021
(GRS1)
PGP000011
|
Oram RA
et al.
Diabetes Care (2015)
Type 1 diabetes (T1D)
type 1 diabetes mellitus
33
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000021/ScoringFiles/PGS000021.txt.gz
PGS000022
(T1D_GRS)
PGP000012
|
Perry DJ
et al.
Sci Rep (2018)
Type 1 diabetes (T1D)
type 1 diabetes mellitus
37
-
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000022/ScoringFiles/PGS000022.txt.gz
PGS000023
(AA_GRS)
PGP000013
|
Onengut-Gumuscu S
et al.
Diabetes Care (2019)
Type 1 diabetes (T1D)
type 1 diabetes mellitus
7
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000023/ScoringFiles/PGS000023.txt.gz
PGS000024
(GRS2)
PGP000014
|
Sharp SA
et al.
Diabetes Care (2019)
Type 1 diabetes (T1D)
type 1 diabetes mellitus
85
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000024/ScoringFiles/PGS000024.txt.gz
PGS000025
(GRS)
PGP000015
|
Chouraki V
et al.
J Alzheimers Dis (2016)
Alzheimer's disease
Alzheimer disease
19
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000025/ScoringFiles/PGS000025.txt.gz
PGS000026
(PHS)
PGP000016
|
Desikan RS
et al.
PLoS Med (2017)
Alzheimer's disease
Alzheimer disease
33
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000026/ScoringFiles/PGS000026.txt.gz
PGS000027
(GPS_BMI)
PGP000017
|
Khera AV
et al.
Cell (2019)
Body mass index (BMI)
body mass index
2,100,302
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000027/ScoringFiles/PGS000027.txt.gz
- Check
Terms/Licenses
PGS000028
(PRS)
PGP000018
|
Shieh Y
et al.
Breast Cancer Res Treat (2016)
Breast cancer
breast carcinoma
83
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000028/ScoringFiles/PGS000028.txt.gz
PGS000029
(PRS_AS)
PGP000018
|
Shieh Y
et al.
Breast Cancer Res Treat (2016)
Breast cancer
breast carcinoma
76
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000029/ScoringFiles/PGS000029.txt.gz
PGS000030
(PrCa)
PGP000019
|
Schumacher FR
et al.
Nat Genet (2018)
Prostate cancer
prostate carcinoma
147
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000030/ScoringFiles/PGS000030.txt.gz
PGS000031
(GRSt)
PGP000020
|
Vassy JL
et al.
Diabetes (2014)
Type 2 diabetes (T2D)
type 2 diabetes mellitus
62
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000031/ScoringFiles/PGS000031.txt.gz
PGS000032
(GRSB)
PGP000020
|
Vassy JL
et al.
Diabetes (2014)
Type 2 diabetes (based on SNPs involved in β-cell function)
type 2 diabetes mellitus
20
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000032/ScoringFiles/PGS000032.txt.gz
PGS000033
(GRSIR)
PGP000020
|
Vassy JL
et al.
Diabetes (2014)
Type 2 diabetes (based on SNPs involved in insulin resistance)
type 2 diabetes mellitus
10
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000033/ScoringFiles/PGS000033.txt.gz
PGS000034
(GRS_BMI)
PGP000021
|
Song M
et al.
Diabetes (2017)
Adult body mass index (BMI)
body mass index
97
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000034/ScoringFiles/PGS000034.txt.gz
PGS000035
(PRS_AF)
PGP000022
|
Weng LC
et al.
Circulation (2017)
Atrial fibrillation
atrial fibrillation
1,168
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000035/ScoringFiles/PGS000035.txt.gz
PGS000036
(gePS_T2D)
PGP000023
|
Mahajan A
et al.
Nat Genet (2018)
Type 2 diabetes (T2D)
type 2 diabetes mellitus
171,249
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000036/ScoringFiles/PGS000036.txt.gz
PGS000037
(PGS_AST)
PGP000025
|
Belsky DW
et al.
Lancet Respir Med (2013)
Asthma
asthma
15
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000037/ScoringFiles/PGS000037.txt.gz
PGS000038
(PRS90)
PGP000026
|
Rutten-Jacobs LC
et al.
BMJ (2018)
Stroke
stroke
90
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000038/ScoringFiles/PGS000038.txt.gz
PGS000039
(metaGRS_ischaemicstroke)
PGP000027
|
Abraham G
et al.
Nat Commun (2019)
Ischemic stroke
stroke
,
Ischemic stroke
3,225,583
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000039/ScoringFiles/PGS000039.txt.gz
PGS000040
(GRS_CeD)
PGP000028
|
Abraham G
et al.
PLoS Genet (2014)
Coeliac disease
celiac disease
228
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000040/ScoringFiles/PGS000040.txt.gz
PGS000041
(GRS-DQ2.5-CeD)
PGP000029
|
Abraham G
et al.
Genome Med (2015)
Coeliac disease
celiac disease
2,513
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000041/ScoringFiles/PGS000041.txt.gz
PGS000042
(GRS-DQ2.5-CeD-imputed)
PGP000029
|
Abraham G
et al.
Genome Med (2015)
Coeliac disease
celiac disease
3,317
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000042/ScoringFiles/PGS000042.txt.gz
PGS000043
(PRS_VTE)
PGP000030
|
Klarin D
et al.
Nat Genet (2019)
Venous thromboembolism
venous thromboembolism
297
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000043/ScoringFiles/PGS000043.txt.gz
PGS000044
(PrCa66)
PGP000031
|
Pashayan N
et al.
Br J Cancer (2015)
Prostate cancer
prostate carcinoma
66
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000044/ScoringFiles/PGS000044.txt.gz
PGS000045
(BCPRS_Overall)
PGP000033
|
Kuchenbaecker KB
et al.
J Natl Cancer Inst (2017)
Breast cancer
breast carcinoma
88
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000045/ScoringFiles/PGS000045.txt.gz
PGS000046
(BCPRS_ER+)
PGP000033
|
Kuchenbaecker KB
et al.
J Natl Cancer Inst (2017)
Estrogen receptor [ER]-positive breast cancer
estrogen-receptor positive breast cancer
87
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000046/ScoringFiles/PGS000046.txt.gz
PGS000047
(BCPRS_ER-)
PGP000033
|
Kuchenbaecker KB
et al.
J Natl Cancer Inst (2017)
Estrogen receptor [ER]-negative breast cancer
estrogen-receptor negative breast cancer
53
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000047/ScoringFiles/PGS000047.txt.gz
PGS000048
(OCPRS_Overall)
PGP000033
|
Kuchenbaecker KB
et al.
J Natl Cancer Inst (2017)
Ovarian cancer
ovarian carcinoma
17
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000048/ScoringFiles/PGS000048.txt.gz
PGS000049
(PRS103_PrCa)
PGP000034
|
Lecarpentier J
et al.
J Clin Oncol (2017)
Prostate cancer
prostate carcinoma
103
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000049/ScoringFiles/PGS000049.txt.gz
PGS000050
(PRS44)
PGP000035
|
Wen W
et al.
Breast Cancer Res (2016)
Breast cancer
breast carcinoma
44
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000050/ScoringFiles/PGS000050.txt.gz
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